Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 5976 | 3' | -57.4 | NC_001806.1 | + | 77365 | 0.66 | 0.816222 |
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Target: 5'- -cGCCAaGGccacAGGCCAGaCGGGcGCgGGCg -3' miRNA: 3'- gaUGGUaCC----UCCGGUC-GUCU-CGgUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 134845 | 0.66 | 0.816222 |
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Target: 5'- -cGCCGaccUGGcgcaccucgcAGGCCAgGCGGAG-CAGCg -3' miRNA: 3'- gaUGGU---ACC----------UCCGGU-CGUCUCgGUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 2721 | 0.66 | 0.816222 |
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Target: 5'- --cCCAgggGGucgGGGCCcucGGCGG-GCCGGCg -3' miRNA: 3'- gauGGUa--CC---UCCGG---UCGUCuCGGUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 98928 | 0.66 | 0.819683 |
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Target: 5'- uCUGCCAUGGAgcgcacggaacacaaGGCCAaGaagaAGGGCacgAGCg -3' miRNA: 3'- -GAUGGUACCU---------------CCGGU-Cg---UCUCGg--UCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 128709 | 0.66 | 0.824823 |
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Target: 5'- -gGCCGUGGAGuucaccCCGGCAuaaGAGCUcgccuGGCg -3' miRNA: 3'- gaUGGUACCUCc-----GGUCGU---CUCGG-----UCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 22875 | 0.66 | 0.824823 |
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Target: 5'- -gGCCGUcccGGGGCUGGcCGGGGcCCGGCc -3' miRNA: 3'- gaUGGUAc--CUCCGGUC-GUCUC-GGUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 134301 | 0.66 | 0.824823 |
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Target: 5'- -gGCCGagagaacgGGGGGCgGGUuguuGGCCAGCa -3' miRNA: 3'- gaUGGUa-------CCUCCGgUCGuc--UCGGUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 55615 | 0.66 | 0.804789 |
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Target: 5'- -gGgCGUGGAGGUgGGCuuggggguuguuggGGGGCUGGCc -3' miRNA: 3'- gaUgGUACCUCCGgUCG--------------UCUCGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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