Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5976 | 3' | -57.4 | NC_001806.1 | + | 5100 | 0.66 | 0.841491 |
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Target: 5'- -gGCCcgucgGUGG-GGCCcGgGGAGCCGGg -3' miRNA: 3'- gaUGG-----UACCuCCGGuCgUCUCGGUCg -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 122777 | 0.66 | 0.841491 |
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Target: 5'- gUACCAacucGGGGGCCAGgAauuCCAGCu -3' miRNA: 3'- gAUGGUa---CCUCCGGUCgUcucGGUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 128529 | 0.66 | 0.841491 |
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Target: 5'- -gGCCAUGcGGGCC-GCAGccagacggcGGCCcGCg -3' miRNA: 3'- gaUGGUACcUCCGGuCGUC---------UCGGuCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 135259 | 0.66 | 0.844734 |
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Target: 5'- cCUACCcgGGGGGCCcgaAGCacugacucaaaguagGGGGCgacgaaugCGGCg -3' miRNA: 3'- -GAUGGuaCCUCCGG---UCG---------------UCUCG--------GUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 37790 | 0.66 | 0.848745 |
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Target: 5'- -gGCCGgggcgcGGGGGUCcGCGGGcgggggggcaaucGCCAGCg -3' miRNA: 3'- gaUGGUa-----CCUCCGGuCGUCU-------------CGGUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 2222 | 0.66 | 0.849541 |
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Target: 5'- -gGCCGUGuccGGCCcGCAcAGCCGGUu -3' miRNA: 3'- gaUGGUACcu-CCGGuCGUcUCGGUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 148391 | 0.66 | 0.849541 |
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Target: 5'- --uCCGUGGuGGGCUccGGguGGGUgGGCg -3' miRNA: 3'- gauGGUACC-UCCGG--UCguCUCGgUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 3094 | 0.66 | 0.849541 |
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Target: 5'- -gGCgGcGGcGGCC-GCGGAGCuCGGCa -3' miRNA: 3'- gaUGgUaCCuCCGGuCGUCUCG-GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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