Results 61 - 80 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 74662 | 0.71 | 0.519741 |
Target: 5'- -gGCCAUGGAuGCCgccaagcugacGGCAGAGCUcGCc -3' miRNA: 3'- gaUGGUACCUcCGG-----------UCGUCUCGGuCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 77365 | 0.66 | 0.816222 |
Target: 5'- -cGCCAaGGccacAGGCCAGaCGGGcGCgGGCg -3' miRNA: 3'- gaUGGUaCC----UCCGGUC-GUCU-CGgUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 78584 | 0.68 | 0.741102 |
Target: 5'- uCUACCGgcccacGGGCCAGCAcgucgccGuGCCGGCc -3' miRNA: 3'- -GAUGGUacc---UCCGGUCGU-------CuCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 83799 | 0.68 | 0.742077 |
Target: 5'- -gGCCuccGGGGGCgaggagggGGCGGGGUCGGCg -3' miRNA: 3'- gaUGGua-CCUCCGg-------UCGUCUCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 84093 | 0.67 | 0.798522 |
Target: 5'- gCUGCCGcGGAGGCCcGUcgcgccacGGuccGCCAGUc -3' miRNA: 3'- -GAUGGUaCCUCCGGuCG--------UCu--CGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 84433 | 0.7 | 0.630989 |
Target: 5'- -aGCCcgGGgacggGGGCCGGUuuguGAGCCuGCu -3' miRNA: 3'- gaUGGuaCC-----UCCGGUCGu---CUCGGuCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 84841 | 0.71 | 0.566651 |
Target: 5'- cCUAUCAcggcaaGGAGcGCCGGCGGucgcgcuccucugcGGCCGGCg -3' miRNA: 3'- -GAUGGUa-----CCUC-CGGUCGUC--------------UCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 85981 | 0.7 | 0.630989 |
Target: 5'- cCU-CCcgGGGGGUCGGCAG-GCgaCGGCg -3' miRNA: 3'- -GAuGGuaCCUCCGGUCGUCuCG--GUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 88366 | 0.76 | 0.312994 |
Target: 5'- -gGCCAUcGGGGccGCCGGCuGGGCUAGCg -3' miRNA: 3'- gaUGGUA-CCUC--CGGUCGuCUCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 92933 | 0.67 | 0.761377 |
Target: 5'- -gGCC-UGGAGGCC---GGGGCCcGCg -3' miRNA: 3'- gaUGGuACCUCCGGucgUCUCGGuCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 93098 | 0.68 | 0.702392 |
Target: 5'- -gACCGUGuGuuucAGGCCGGgAacuGGGCCAGCc -3' miRNA: 3'- gaUGGUAC-C----UCCGGUCgU---CUCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 94198 | 0.67 | 0.751781 |
Target: 5'- -gGCC-UGGAGGCCcaGGCcGGGGCCu-- -3' miRNA: 3'- gaUGGuACCUCCGG--UCG-UCUCGGucg -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 98028 | 0.67 | 0.78944 |
Target: 5'- -cACCGUG--GGCCGGCGG-GUgAGCg -3' miRNA: 3'- gaUGGUACcuCCGGUCGUCuCGgUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 98928 | 0.66 | 0.819683 |
Target: 5'- uCUGCCAUGGAgcgcacggaacacaaGGCCAaGaagaAGGGCacgAGCg -3' miRNA: 3'- -GAUGGUACCU---------------CCGGU-Cg---UCUCGg--UCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 100311 | 0.68 | 0.742077 |
Target: 5'- -gGCUggGGuugGGGCgCGGCAuGGCCGGCg -3' miRNA: 3'- gaUGGuaCC---UCCG-GUCGUcUCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 107023 | 0.67 | 0.761377 |
Target: 5'- gCUugCcgGGuuGGCCGcccGCGGGGCC-GCg -3' miRNA: 3'- -GAugGuaCCu-CCGGU---CGUCUCGGuCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 119560 | 0.72 | 0.481061 |
Target: 5'- -cGCCAUGGGGGCgGcugacgcagauGCGGuGCUGGCg -3' miRNA: 3'- gaUGGUACCUCCGgU-----------CGUCuCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 122777 | 0.66 | 0.841491 |
Target: 5'- gUACCAacucGGGGGCCAGgAauuCCAGCu -3' miRNA: 3'- gAUGGUa---CCUCCGGUCgUcucGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 128427 | 0.74 | 0.387825 |
Target: 5'- -aACCA-GGuGGGCCAGCuggcugaugcgauGGGCCAGCa -3' miRNA: 3'- gaUGGUaCC-UCCGGUCGu------------CUCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 128529 | 0.66 | 0.841491 |
Target: 5'- -gGCCAUGcGGGCC-GCAGccagacggcGGCCcGCg -3' miRNA: 3'- gaUGGUACcUCCGGuCGUC---------UCGGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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