Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5976 | 3' | -57.4 | NC_001806.1 | + | 144963 | 0.68 | 0.742077 |
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Target: 5'- --cCCGUGGcGGcCCGGCccGGGGCCccGGCg -3' miRNA: 3'- gauGGUACCuCC-GGUCG--UCUCGG--UCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 147679 | 0.68 | 0.692299 |
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Target: 5'- -cGCCccGGGGGCCggGGCgcgGGGGCgGGCc -3' miRNA: 3'- gaUGGuaCCUCCGG--UCG---UCUCGgUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 147771 | 0.71 | 0.529605 |
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Target: 5'- -gGCCGcggacgcgGGGGGCCcggggcggggGGCGGAGCCuGGCa -3' miRNA: 3'- gaUGGUa-------CCUCCGG----------UCGUCUCGG-UCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 147819 | 0.66 | 0.833249 |
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Target: 5'- -cGCCGcgGGGGGCCuGUGGggagaGGCCGGg -3' miRNA: 3'- gaUGGUa-CCUCCGGuCGUC-----UCGGUCg -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 148148 | 0.66 | 0.841491 |
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Target: 5'- -cGCCcgucacgGGGGGCgCGGCGGcGCCucuGCg -3' miRNA: 3'- gaUGGua-----CCUCCG-GUCGUCuCGGu--CG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 148391 | 0.66 | 0.849541 |
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Target: 5'- --uCCGUGGuGGGCUccGGguGGGUgGGCg -3' miRNA: 3'- gauGGUACC-UCCGG--UCguCUCGgUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 151276 | 0.71 | 0.559584 |
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Target: 5'- -gGCgGUGGGGGCCggGGCcgGGGGgCGGCg -3' miRNA: 3'- gaUGgUACCUCCGG--UCG--UCUCgGUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 151439 | 0.68 | 0.732278 |
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Target: 5'- -cACCGgcgGGGGGCggCGGCGGGG-CGGCc -3' miRNA: 3'- gaUGGUa--CCUCCG--GUCGUCUCgGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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