miRNA display CGI


Results 81 - 100 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 3' -57.4 NC_001806.1 + 30638 0.71 0.549533
Target:  5'- -gGCCggGGGGGCgCGGcCAGGGUgGGCc -3'
miRNA:   3'- gaUGGuaCCUCCG-GUC-GUCUCGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 29448 0.77 0.247235
Target:  5'- -gGCCGaGGAGGCCGuCAGGGCgGGCa -3'
miRNA:   3'- gaUGGUaCCUCCGGUcGUCUCGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 27077 0.8 0.166172
Target:  5'- gUGCCcgGGcccuGGCCcGCGGAGCCGGCc -3'
miRNA:   3'- gAUGGuaCCu---CCGGuCGUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 24883 0.71 0.539538
Target:  5'- -gGCCGUGGAGGUgcugggGGCGGAGgCgGGCu -3'
miRNA:   3'- gaUGGUACCUCCGg-----UCGUCUC-GgUCG- -5'
5976 3' -57.4 NC_001806.1 + 24139 0.7 0.583902
Target:  5'- -gGCCGUGGAGuuucuggggcugcucGCCAGC---GCCGGCg -3'
miRNA:   3'- gaUGGUACCUC---------------CGGUCGucuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 23948 0.67 0.780217
Target:  5'- -gGCCuggGGGGGCCGccggagugguccGCcGAGCgCGGCg -3'
miRNA:   3'- gaUGGua-CCUCCGGU------------CGuCUCG-GUCG- -5'
5976 3' -57.4 NC_001806.1 + 22875 0.66 0.824823
Target:  5'- -gGCCGUcccGGGGCUGGcCGGGGcCCGGCc -3'
miRNA:   3'- gaUGGUAc--CUCCGGUC-GUCUC-GGUCG- -5'
5976 3' -57.4 NC_001806.1 + 22562 0.66 0.833249
Target:  5'- -cGCUgacGGGGGCCGcGgGGAGCCccGGCg -3'
miRNA:   3'- gaUGGua-CCUCCGGU-CgUCUCGG--UCG- -5'
5976 3' -57.4 NC_001806.1 + 22413 0.77 0.278573
Target:  5'- -cGCCAUGGcGGCCGGCcgcuucggcuGGGGCCuGGCg -3'
miRNA:   3'- gaUGGUACCuCCGGUCG----------UCUCGG-UCG- -5'
5976 3' -57.4 NC_001806.1 + 20724 0.7 0.590017
Target:  5'- -cGCCG-GGGGGgCGG-GGGGCCGGCg -3'
miRNA:   3'- gaUGGUaCCUCCgGUCgUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 20329 0.69 0.651511
Target:  5'- -gGCCAaugGGGGGgCGGCAaGGCgGGCg -3'
miRNA:   3'- gaUGGUa--CCUCCgGUCGUcUCGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 20170 0.67 0.761377
Target:  5'- -cGCCcgGGcccgcccccgGGGCCGGCgcGGAGUCGGg -3'
miRNA:   3'- gaUGGuaCC----------UCCGGUCG--UCUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 10536 0.66 0.807452
Target:  5'- -gACCAccGAGGCCacuuGGC-GAGCCGGg -3'
miRNA:   3'- gaUGGUacCUCCGG----UCGuCUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 10411 0.68 0.722391
Target:  5'- -aGCCG-GGGGGUCccgcuGGCGGGaguGCCGGCg -3'
miRNA:   3'- gaUGGUaCCUCCGG-----UCGUCU---CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 9498 0.69 0.676049
Target:  5'- -aGCCggauccauugGUGGAGGgagagucgggucucuCCGGgGGGGCCAGCc -3'
miRNA:   3'- gaUGG----------UACCUCC---------------GGUCgUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 5655 0.68 0.692299
Target:  5'- uCUGCCAUGGgcggggcgcgAGGgCGGguGGGUCcGCg -3'
miRNA:   3'- -GAUGGUACC----------UCCgGUCguCUCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 5490 0.68 0.732278
Target:  5'- -gGCCGgcgggaaGGAGGagCAGCGGAggccGCCGGCc -3'
miRNA:   3'- gaUGGUa------CCUCCg-GUCGUCU----CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 5100 0.66 0.841491
Target:  5'- -gGCCcgucgGUGG-GGCCcGgGGAGCCGGg -3'
miRNA:   3'- gaUGG-----UACCuCCGGuCgUCUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 4879 1.11 0.001337
Target:  5'- uCUACCAUGGAGGCCAGCAGAGCCAGCu -3'
miRNA:   3'- -GAUGGUACCUCCGGUCGUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 4746 0.66 0.833249
Target:  5'- -gGCCGgggcccGGucGCCGGCGGcGUCGGCu -3'
miRNA:   3'- gaUGGUa-----CCucCGGUCGUCuCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.