Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5976 | 3' | -57.4 | NC_001806.1 | + | 3344 | 0.75 | 0.320254 |
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Target: 5'- -gGCCGcgGGGGGCUGGCGGgccgggccccGGCCAGCc -3' miRNA: 3'- gaUGGUa-CCUCCGGUCGUC----------UCGGUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 3094 | 0.66 | 0.849541 |
|
Target: 5'- -gGCgGcGGcGGCC-GCGGAGCuCGGCa -3' miRNA: 3'- gaUGgUaCCuCCGGuCGUCUCG-GUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 2988 | 0.69 | 0.661753 |
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Target: 5'- -gGCgCggGGAGGCggCGGCGGccGCCAGCg -3' miRNA: 3'- gaUG-GuaCCUCCG--GUCGUCu-CGGUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 2759 | 0.68 | 0.722391 |
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Target: 5'- -gGCCAcGGGGcGCgGGCGG-GCCuGCg -3' miRNA: 3'- gaUGGUaCCUC-CGgUCGUCuCGGuCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 2721 | 0.66 | 0.816222 |
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Target: 5'- --cCCAgggGGucgGGGCCcucGGCGG-GCCGGCg -3' miRNA: 3'- gauGGUa--CC---UCCGG---UCGUCuCGGUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 2222 | 0.66 | 0.849541 |
|
Target: 5'- -gGCCGUGuccGGCCcGCAcAGCCGGUu -3' miRNA: 3'- gaUGGUACcu-CCGGuCGUcUCGGUCG- -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 1488 | 0.67 | 0.755632 |
|
Target: 5'- -cACCAgcggGGGGGCgucgucgucgggcucCAGCAGGGCgCGGg -3' miRNA: 3'- gaUGGUa---CCUCCG---------------GUCGUCUCG-GUCg -5' |
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| 5976 | 3' | -57.4 | NC_001806.1 | + | 1414 | 0.69 | 0.641254 |
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Target: 5'- --cCCGUGGccgAGGCCcagcgaaucccgGGCGGcGCCGGCg -3' miRNA: 3'- gauGGUACC---UCCGG------------UCGUCuCGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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