miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 5' -65.4 NC_001806.1 + 49127 0.66 0.544818
Target:  5'- -aGGCGcgcauccacccgCCCCcGCG-CCUCGCCcguGGCg -3'
miRNA:   3'- ugCCGCa-----------GGGGcCGCaGGAGCGG---CCG- -5'
5976 5' -65.4 NC_001806.1 + 23216 0.66 0.546671
Target:  5'- gGCGGCGgCCagcgcaCCGGaCGccgCCgacgCGCUGGCg -3'
miRNA:   3'- -UGCCGCaGG------GGCC-GCa--GGa---GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 33760 0.66 0.546671
Target:  5'- gGCGGCGgCUgCGGCGgCUgCGgCGGCc -3'
miRNA:   3'- -UGCCGCaGGgGCCGCaGGaGCgGCCG- -5'
5976 5' -65.4 NC_001806.1 + 79399 0.66 0.546671
Target:  5'- cCGGCGgCCCCGcGCcccUCCUUGCCccGGa -3'
miRNA:   3'- uGCCGCaGGGGC-CGc--AGGAGCGG--CCg -5'
5976 5' -65.4 NC_001806.1 + 112259 0.66 0.546671
Target:  5'- -gGGUGgCCCgGGCGaCCcuggUCGCCGaGCu -3'
miRNA:   3'- ugCCGCaGGGgCCGCaGG----AGCGGC-CG- -5'
5976 5' -65.4 NC_001806.1 + 68586 0.66 0.528239
Target:  5'- cGCGGCGgCCCUGgggccgguccGCGUCCgccagugCGCCGuGg -3'
miRNA:   3'- -UGCCGCaGGGGC----------CGCAGGa------GCGGC-Cg -5'
5976 5' -65.4 NC_001806.1 + 52522 0.66 0.528239
Target:  5'- uGCGGC--UCgUGGCGU-CUCGCCGGa -3'
miRNA:   3'- -UGCCGcaGGgGCCGCAgGAGCGGCCg -5'
5976 5' -65.4 NC_001806.1 + 73157 0.66 0.501041
Target:  5'- cACGGU---UCCGGCGUCCUCacagGCCcucgaGGCg -3'
miRNA:   3'- -UGCCGcagGGGCCGCAGGAG----CGG-----CCG- -5'
5976 5' -65.4 NC_001806.1 + 24235 0.66 0.504633
Target:  5'- cGCGGUGUCgcggcagcacgccuaCCUGGCGUgcgagcugcugCC-CGCCGuGCa -3'
miRNA:   3'- -UGCCGCAG---------------GGGCCGCA-----------GGaGCGGC-CG- -5'
5976 5' -65.4 NC_001806.1 + 99975 0.66 0.506433
Target:  5'- cGCGGCGcgccucgagccUCCCCGGgguaguacggguaGUCCgCGuCCGGUu -3'
miRNA:   3'- -UGCCGC-----------AGGGGCCg------------CAGGaGC-GGCCG- -5'
5976 5' -65.4 NC_001806.1 + 115390 0.66 0.510041
Target:  5'- aACGGgG-CCUaccaccucaaCGGgG-CCUCGCCGGUg -3'
miRNA:   3'- -UGCCgCaGGG----------GCCgCaGGAGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 93585 0.66 0.510041
Target:  5'- uCGGCGgcccgggggCCCCGGgacCGgcaUUUGCCGGCc -3'
miRNA:   3'- uGCCGCa--------GGGGCC---GCag-GAGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 3139 0.66 0.510041
Target:  5'- cGCGGgGcccagggCCCCGGCGaCCagGCucaCGGCg -3'
miRNA:   3'- -UGCCgCa------GGGGCCGCaGGagCG---GCCG- -5'
5976 5' -65.4 NC_001806.1 + 87297 0.66 0.510041
Target:  5'- cCGGCgGUCuCCCGcGCGcCCU--CCGGCu -3'
miRNA:   3'- uGCCG-CAG-GGGC-CGCaGGAgcGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 151116 0.66 0.510041
Target:  5'- cGCGGgGggCUCCGGCGcccccUCCcCGCCcGCg -3'
miRNA:   3'- -UGCCgCa-GGGGCCGC-----AGGaGCGGcCG- -5'
5976 5' -65.4 NC_001806.1 + 638 0.66 0.510041
Target:  5'- cCGGCcccagcccUCCCCGGCcccaGcCCUCcCCGGCc -3'
miRNA:   3'- uGCCGc-------AGGGGCCG----CaGGAGcGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 140027 0.66 0.510041
Target:  5'- cGCGGCGaaagcgCCCgGaGCG-CCacgGCCGGCa -3'
miRNA:   3'- -UGCCGCa-----GGGgC-CGCaGGag-CGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 69898 0.66 0.518199
Target:  5'- cGCGGCGacccagauccgcuUCCCCgcccucgagGGCauucaccccaacGUCCUCGCCGa- -3'
miRNA:   3'- -UGCCGC-------------AGGGG---------CCG------------CAGGAGCGGCcg -5'
5976 5' -65.4 NC_001806.1 + 134837 0.66 0.519108
Target:  5'- cUGGCGgucgccgaCCUGGCGcaCCUCGCaGGCc -3'
miRNA:   3'- uGCCGCag------GGGCCGCa-GGAGCGgCCG- -5'
5976 5' -65.4 NC_001806.1 + 38394 0.66 0.519108
Target:  5'- cGCGGCGgcucUCCgCCGGCucggggggGUCCUCGUCc-- -3'
miRNA:   3'- -UGCCGC----AGG-GGCCG--------CAGGAGCGGccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.