Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5978 | 5' | -61.3 | NC_001806.1 | + | 142867 | 0.75 | 0.244509 |
|
Target: 5'- -cCCGuAUCCCCgUUCCCGCGCUuuUCGUUg -3' miRNA: 3'- ccGGC-UAGGGG-GAGGGCGCGA--AGCAG- -5' |
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| 5978 | 5' | -61.3 | NC_001806.1 | + | 145975 | 0.73 | 0.313338 |
|
Target: 5'- uGGCCGA-CCCCCUUuuGgGCgcccCGUCc -3' miRNA: 3'- -CCGGCUaGGGGGAGggCgCGaa--GCAG- -5' |
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| 5978 | 5' | -61.3 | NC_001806.1 | + | 147320 | 0.67 | 0.615375 |
|
Target: 5'- uGGCCGcgCCCCC-CCgGCcCUgaGUCg -3' miRNA: 3'- -CCGGCuaGGGGGaGGgCGcGAagCAG- -5' |
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| 5978 | 5' | -61.3 | NC_001806.1 | + | 147550 | 0.67 | 0.654575 |
|
Target: 5'- cGGCC---CCCCCgagCCgCGCGCcacCGUCg -3' miRNA: 3'- -CCGGcuaGGGGGa--GG-GCGCGaa-GCAG- -5' |
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| 5978 | 5' | -61.3 | NC_001806.1 | + | 150666 | 0.67 | 0.615375 |
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Target: 5'- uGGCCGggCCCCg--CCGCGCUggCGg- -3' miRNA: 3'- -CCGGCuaGGGGgagGGCGCGAa-GCag -5' |
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| 5978 | 5' | -61.3 | NC_001806.1 | + | 151122 | 0.7 | 0.437761 |
|
Target: 5'- gGGCUccgGcgCCCCCUCCC-CGCccgcgCGUCg -3' miRNA: 3'- -CCGG---CuaGGGGGAGGGcGCGaa---GCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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