miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5979 5' -54.8 NC_001806.1 + 147344 0.66 0.941706
Target:  5'- uCGGaGggGGGGUGCGucgccgcccucuuGGCCCCugccgGCGCGa -3'
miRNA:   3'- -GCCaUuaCUCUAUGC-------------UCGGGG-----CGCGC- -5'
5979 5' -54.8 NC_001806.1 + 46891 0.66 0.937461
Target:  5'- gGGaAGUcacGAGGUAgGGGCggCCCGUGCGg -3'
miRNA:   3'- gCCaUUA---CUCUAUgCUCG--GGGCGCGC- -5'
5979 5' -54.8 NC_001806.1 + 62296 0.66 0.932518
Target:  5'- aCGGcgacgacAGUG-GcgGCGGGCCUgGCGCGg -3'
miRNA:   3'- -GCCa------UUACuCuaUGCUCGGGgCGCGC- -5'
5979 5' -54.8 NC_001806.1 + 89513 0.66 0.932518
Target:  5'- gCGGauccGGGcgGCGAGCUgCUGCGCGg -3'
miRNA:   3'- -GCCauuaCUCuaUGCUCGG-GGCGCGC- -5'
5979 5' -54.8 NC_001806.1 + 39205 0.66 0.932518
Target:  5'- uGcGUucuUGGGGgcCGGGCCCCGcCGCa -3'
miRNA:   3'- gC-CAuu-ACUCUauGCUCGGGGC-GCGc -5'
5979 5' -54.8 NC_001806.1 + 65626 0.67 0.927336
Target:  5'- uGGUGgccGUGGGcgagAgGGGCCCCG-GCGg -3'
miRNA:   3'- gCCAU---UACUCua--UgCUCGGGGCgCGC- -5'
5979 5' -54.8 NC_001806.1 + 38194 0.67 0.927336
Target:  5'- uGGU--UGAGGaucgUugGGGCCCUGcCGCu -3'
miRNA:   3'- gCCAuuACUCU----AugCUCGGGGC-GCGc -5'
5979 5' -54.8 NC_001806.1 + 90162 0.67 0.927336
Target:  5'- cCGGgccccUGGGAUACGuGUacgCUCGCGCGu -3'
miRNA:   3'- -GCCauu--ACUCUAUGCuCG---GGGCGCGC- -5'
5979 5' -54.8 NC_001806.1 + 38097 0.67 0.920243
Target:  5'- uCGGUG--GGGGUugGAGgcgggccaccuugcCCCCGUGCu -3'
miRNA:   3'- -GCCAUuaCUCUAugCUC--------------GGGGCGCGc -5'
5979 5' -54.8 NC_001806.1 + 47341 0.67 0.920243
Target:  5'- uGGgcuuuagc-GCGGGCCCCGCGCu -3'
miRNA:   3'- gCCauuacucuaUGCUCGGGGCGCGc -5'
5979 5' -54.8 NC_001806.1 + 23101 0.67 0.916256
Target:  5'- uGGUcgccgGGGcccUGGGCCCCGCGCu -3'
miRNA:   3'- gCCAuua--CUCuauGCUCGGGGCGCGc -5'
5979 5' -54.8 NC_001806.1 + 32199 0.67 0.914511
Target:  5'- cCGGgggacGUGGGGUuggugugcaaaggcACGcGCaCCCGCGCGg -3'
miRNA:   3'- -GCCau---UACUCUA--------------UGCuCG-GGGCGCGC- -5'
5979 5' -54.8 NC_001806.1 + 92930 0.67 0.910358
Target:  5'- gCGGgccugGAGGc-CGGGgCCCGCGCGc -3'
miRNA:   3'- -GCCauua-CUCUauGCUCgGGGCGCGC- -5'
5979 5' -54.8 NC_001806.1 + 49254 0.67 0.904224
Target:  5'- aGGaGAUGGcGGgcgACGAGCcgCCCGUGCGc -3'
miRNA:   3'- gCCaUUACU-CUa--UGCUCG--GGGCGCGC- -5'
5979 5' -54.8 NC_001806.1 + 69408 0.68 0.891257
Target:  5'- gGGUuucuGGcgGCGGGCgucCCCGCGCGg -3'
miRNA:   3'- gCCAuuacUCuaUGCUCG---GGGCGCGC- -5'
5979 5' -54.8 NC_001806.1 + 151044 0.68 0.870111
Target:  5'- cCGGacGUGGG--GCGAGaagcgcaCCCGCGCGg -3'
miRNA:   3'- -GCCauUACUCuaUGCUCg------GGGCGCGC- -5'
5979 5' -54.8 NC_001806.1 + 141467 0.68 0.865647
Target:  5'- aCGGUcccaaccgauucuagAGUGGGAcGCcgccGCCCCGCGCu -3'
miRNA:   3'- -GCCA---------------UUACUCUaUGcu--CGGGGCGCGc -5'
5979 5' -54.8 NC_001806.1 + 3309 0.68 0.862628
Target:  5'- gCGGcgGcgGGGAaGCGGGgCCCGCGgGu -3'
miRNA:   3'- -GCCa-UuaCUCUaUGCUCgGGGCGCgC- -5'
5979 5' -54.8 NC_001806.1 + 2517 0.68 0.862628
Target:  5'- uGGgcGgcGGggGCGGGCCCgGCGCa -3'
miRNA:   3'- gCCauUacUCuaUGCUCGGGgCGCGc -5'
5979 5' -54.8 NC_001806.1 + 136960 0.69 0.854938
Target:  5'- aCGcGUAGUGGGGgcccGCGAGCgUgGUGCGg -3'
miRNA:   3'- -GC-CAUUACUCUa---UGCUCGgGgCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.