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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
598 | 3' | -48.9 | AC_000015.1 | + | 26502 | 1.1 | 0.001979 |
Target: 5'- aUGUGGAGUUAUCAACCCCAAAUGGGAu -3' miRNA: 3'- -ACACCUCAAUAGUUGGGGUUUACCCU- -5' |
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598 | 3' | -48.9 | AC_000015.1 | + | 27936 | 0.75 | 0.424674 |
Target: 5'- cUGUGGAGUcuUAUUAAgUgCGGAUGGGAa -3' miRNA: 3'- -ACACCUCA--AUAGUUgGgGUUUACCCU- -5' |
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598 | 3' | -48.9 | AC_000015.1 | + | 20350 | 0.67 | 0.841744 |
Target: 5'- aGUaGGGGUcaaAUCcaGACCCCAAAgaGGGAg -3' miRNA: 3'- aCA-CCUCAa--UAG--UUGGGGUUUa-CCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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