miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5980 3' -51.7 NC_001806.1 + 55101 0.66 0.9889
Target:  5'- gGCGGAacauGCGgacgCGCACccaCGUCCCGu- -3'
miRNA:   3'- -CGCUU----CGCaa--GCGUGaa-GCAGGGUua -5'
5980 3' -51.7 NC_001806.1 + 6033 0.66 0.983904
Target:  5'- gGCGAAGUGcgaGCACUggcgcCGUgCCCGAc -3'
miRNA:   3'- -CGCUUCGCaagCGUGAa----GCA-GGGUUa -5'
5980 3' -51.7 NC_001806.1 + 4767 0.66 0.983904
Target:  5'- gGCGucggcuGCGUcgUCGUAC-UCGUCCCc-- -3'
miRNA:   3'- -CGCuu----CGCA--AGCGUGaAGCAGGGuua -5'
5980 3' -51.7 NC_001806.1 + 84729 0.66 0.981699
Target:  5'- cGUGAGGCGggCGCGCUgcuuagacgccacUCGaUCUCGc- -3'
miRNA:   3'- -CGCUUCGCaaGCGUGA-------------AGC-AGGGUua -5'
5980 3' -51.7 NC_001806.1 + 5458 0.67 0.974804
Target:  5'- uCGggGCGUccUCGgGCUcauauaGUCCCAGg -3'
miRNA:   3'- cGCuuCGCA--AGCgUGAag----CAGGGUUa -5'
5980 3' -51.7 NC_001806.1 + 61591 0.67 0.969055
Target:  5'- aCGAGGcCGUcgugUGCACggccUCGUCCCGGc -3'
miRNA:   3'- cGCUUC-GCAa---GCGUGa---AGCAGGGUUa -5'
5980 3' -51.7 NC_001806.1 + 37319 0.67 0.969055
Target:  5'- gGCGAGGUuaUCcaGCACagccgcggUCGUCCCGAUa -3'
miRNA:   3'- -CGCUUCGcaAG--CGUGa-------AGCAGGGUUA- -5'
5980 3' -51.7 NC_001806.1 + 95657 0.68 0.965856
Target:  5'- uGCGgcGCGcgCGCGCUUCugcgCCCu-- -3'
miRNA:   3'- -CGCuuCGCaaGCGUGAAGca--GGGuua -5'
5980 3' -51.7 NC_001806.1 + 86043 0.68 0.96243
Target:  5'- cGCGggGgGggCGgGC-UCGUCCCc-- -3'
miRNA:   3'- -CGCuuCgCaaGCgUGaAGCAGGGuua -5'
5980 3' -51.7 NC_001806.1 + 1284 0.68 0.96243
Target:  5'- cGCGccGCcgUCGU-CUUCGUCCCAGg -3'
miRNA:   3'- -CGCuuCGcaAGCGuGAAGCAGGGUUa -5'
5980 3' -51.7 NC_001806.1 + 133679 0.68 0.958772
Target:  5'- gGCGgcGCG-UCGUGCgugUCuGUCCCGGa -3'
miRNA:   3'- -CGCuuCGCaAGCGUGa--AG-CAGGGUUa -5'
5980 3' -51.7 NC_001806.1 + 30323 0.68 0.950312
Target:  5'- cGCGccGUGUgccccagUCGCAC-UCGUCCCu-- -3'
miRNA:   3'- -CGCuuCGCA-------AGCGUGaAGCAGGGuua -5'
5980 3' -51.7 NC_001806.1 + 75219 0.69 0.931702
Target:  5'- uGCGGccguGCGggCGCACcgCGUCCUggUc -3'
miRNA:   3'- -CGCUu---CGCaaGCGUGaaGCAGGGuuA- -5'
5980 3' -51.7 NC_001806.1 + 89018 0.7 0.920663
Target:  5'- cGCGGAGgaCG-UCGCGC-UCGUCCCc-- -3'
miRNA:   3'- -CGCUUC--GCaAGCGUGaAGCAGGGuua -5'
5980 3' -51.7 NC_001806.1 + 24677 0.7 0.914761
Target:  5'- cGCGAGGCGgugCGCGCcggccCGgCCCGGUg -3'
miRNA:   3'- -CGCUUCGCaa-GCGUGaa---GCaGGGUUA- -5'
5980 3' -51.7 NC_001806.1 + 24452 0.7 0.914761
Target:  5'- cGCGu-GCGcaCGCGCUUCGgCCCGGa -3'
miRNA:   3'- -CGCuuCGCaaGCGUGAAGCaGGGUUa -5'
5980 3' -51.7 NC_001806.1 + 20210 0.72 0.825258
Target:  5'- gGCGccAGUGcUCGCACUUCGcCCUAAUa -3'
miRNA:   3'- -CGCu-UCGCaAGCGUGAAGCaGGGUUA- -5'
5980 3' -51.7 NC_001806.1 + 89665 1.01 0.024557
Target:  5'- cGCGAAGCGUUCGCACUUUGUCCUAAUa -3'
miRNA:   3'- -CGCUUCGCAAGCGUGAAGCAGGGUUA- -5'
5980 3' -51.7 NC_001806.1 + 5990 1.09 0.007002
Target:  5'- cGCGAAGCGUUCGCACUUCGUCCCAAUa -3'
miRNA:   3'- -CGCUUCGCAAGCGUGAAGCAGGGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.