miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5982 3' -50.3 NC_001806.1 + 15323 0.66 0.99609
Target:  5'- -cGGUGGGAgagUCGGUGguGCCggucUGGGu -3'
miRNA:   3'- cuCCAUCUUa--GGCUAUguCGGa---ACCU- -5'
5982 3' -50.3 NC_001806.1 + 144791 0.66 0.993782
Target:  5'- cGGGgcGAAggCCGcGUACGGCCcgGGAc -3'
miRNA:   3'- cUCCauCUUa-GGC-UAUGUCGGaaCCU- -5'
5982 3' -50.3 NC_001806.1 + 94275 0.66 0.993782
Target:  5'- cGAGGgcGAGcggcUCCuggGCAGCCU-GGAg -3'
miRNA:   3'- -CUCCauCUU----AGGcuaUGUCGGAaCCU- -5'
5982 3' -50.3 NC_001806.1 + 59199 0.66 0.993782
Target:  5'- aGGGUGGGGuUuuGAUgGCAGCCaggGGAc -3'
miRNA:   3'- cUCCAUCUU-AggCUA-UGUCGGaa-CCU- -5'
5982 3' -50.3 NC_001806.1 + 142166 0.66 0.99321
Target:  5'- cGGGGUGGggUCCGAcguggcgaugauggGCGGCggcgUGGu -3'
miRNA:   3'- -CUCCAUCuuAGGCUa-------------UGUCGga--ACCu -5'
5982 3' -50.3 NC_001806.1 + 5415 0.66 0.992806
Target:  5'- cGGGUcguGGAUCCGugucgGCAGCCgcgcuccgugUGGAc -3'
miRNA:   3'- cUCCAu--CUUAGGCua---UGUCGGa---------ACCU- -5'
5982 3' -50.3 NC_001806.1 + 55986 0.66 0.992806
Target:  5'- gGGGGUGuGcGUUCGAUGCGGCCUc--- -3'
miRNA:   3'- -CUCCAU-CuUAGGCUAUGUCGGAaccu -5'
5982 3' -50.3 NC_001806.1 + 59122 0.67 0.983936
Target:  5'- cGAGGUGGGcUUCGGUggugaggGCAGCCgggccgGGGu -3'
miRNA:   3'- -CUCCAUCUuAGGCUA-------UGUCGGaa----CCU- -5'
5982 3' -50.3 NC_001806.1 + 91994 0.68 0.974968
Target:  5'- cGAGGUGGAGcagCUGAUGCGcaaCCUggUGGAg -3'
miRNA:   3'- -CUCCAUCUUa--GGCUAUGUc--GGA--ACCU- -5'
5982 3' -50.3 NC_001806.1 + 148095 0.69 0.969159
Target:  5'- cGAGGgGGGcgcuGUCCGAgccGCGGCCggcUGGGg -3'
miRNA:   3'- -CUCCaUCU----UAGGCUa--UGUCGGa--ACCU- -5'
5982 3' -50.3 NC_001806.1 + 19413 0.73 0.840061
Target:  5'- -cGGUcGAAUCCGAUGCuGUCUcGGAu -3'
miRNA:   3'- cuCCAuCUUAGGCUAUGuCGGAaCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.