Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 86065 | 0.69 | 0.958614 |
Target: 5'- --cCUGGGGCGGCGgcgucuagcucgCGGAgggCGGCCa -3' miRNA: 3'- uuaGGCUCUGUCGUa-----------GCCUaa-GCUGG- -5' |
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5982 | 5' | -51.3 | NC_001806.1 | + | 86414 | 0.69 | 0.948404 |
Target: 5'- -cUCCgGAGACGGUAUCGucguaaaacagcaggUCGACCa -3' miRNA: 3'- uuAGG-CUCUGUCGUAGCcua------------AGCUGG- -5' |
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5982 | 5' | -51.3 | NC_001806.1 | + | 27037 | 0.69 | 0.937647 |
Target: 5'- --gCCGAGGCGGuCAUCGGGc-CGugCc -3' miRNA: 3'- uuaGGCUCUGUC-GUAGCCUaaGCugG- -5' |
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5982 | 5' | -51.3 | NC_001806.1 | + | 31302 | 0.71 | 0.896676 |
Target: 5'- uGGUCCGGGG-AGCAggGGGcgUCGACCc -3' miRNA: 3'- -UUAGGCUCUgUCGUagCCUa-AGCUGG- -5' |
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5982 | 5' | -51.3 | NC_001806.1 | + | 19450 | 0.71 | 0.882728 |
Target: 5'- -cUCCaAGGCuGUAUCGGAUUCuACCu -3' miRNA: 3'- uuAGGcUCUGuCGUAGCCUAAGcUGG- -5' |
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5982 | 5' | -51.3 | NC_001806.1 | + | 137865 | 0.72 | 0.852039 |
Target: 5'- --gCCGAcgcaGACGGCGUCccuGGAgUCGACCu -3' miRNA: 3'- uuaGGCU----CUGUCGUAG---CCUaAGCUGG- -5' |
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5982 | 5' | -51.3 | NC_001806.1 | + | 65156 | 0.73 | 0.817967 |
Target: 5'- cAUCCGAGuCGGaAUCGGA--CGACCg -3' miRNA: 3'- uUAGGCUCuGUCgUAGCCUaaGCUGG- -5' |
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5982 | 5' | -51.3 | NC_001806.1 | + | 68239 | 0.73 | 0.799819 |
Target: 5'- --gCCGAGACGGCAaacggggCGGA--CGACCc -3' miRNA: 3'- uuaGGCUCUGUCGUa------GCCUaaGCUGG- -5' |
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5982 | 5' | -51.3 | NC_001806.1 | + | 4823 | 0.75 | 0.721556 |
Target: 5'- gGGUCCGGGGCGGCGaggccgCGGggUCGGgCg -3' miRNA: 3'- -UUAGGCUCUGUCGUa-----GCCuaAGCUgG- -5' |
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5982 | 5' | -51.3 | NC_001806.1 | + | 105125 | 0.78 | 0.564508 |
Target: 5'- gGAUUgGGGACAGCuuUCGGGggCGGCCg -3' miRNA: 3'- -UUAGgCUCUGUCGu-AGCCUaaGCUGG- -5' |
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5982 | 5' | -51.3 | NC_001806.1 | + | 19418 | 0.8 | 0.454597 |
Target: 5'- gAAUCCGAuGCuGUcUCGGAUUCGACCu -3' miRNA: 3'- -UUAGGCUcUGuCGuAGCCUAAGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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