miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5983 3' -56.5 NC_001806.1 + 143240 0.66 0.89122
Target:  5'- uGCugGUGGUGCgGgUUGggGgGGGa -3'
miRNA:   3'- gCGugCACCACGgCaAACgaCgUCCa -5'
5983 3' -56.5 NC_001806.1 + 99866 0.66 0.884362
Target:  5'- cCGCAUGUGc-GCCaGUUccUGCUGCAGa- -3'
miRNA:   3'- -GCGUGCACcaCGG-CAA--ACGACGUCca -5'
5983 3' -56.5 NC_001806.1 + 142197 0.66 0.869976
Target:  5'- gGCgGCGUGGUGagGggcuucgGCUGCAGGc -3'
miRNA:   3'- gCG-UGCACCACggCaaa----CGACGUCCa -5'
5983 3' -56.5 NC_001806.1 + 67227 0.66 0.869976
Target:  5'- gCGCugGUGG-GCCag--GUgagGCAGGUc -3'
miRNA:   3'- -GCGugCACCaCGGcaaaCGa--CGUCCA- -5'
5983 3' -56.5 NC_001806.1 + 105550 0.66 0.869233
Target:  5'- aCGCACG-GGUGUuggguCGUUUGUUcauaaacGCGGGg -3'
miRNA:   3'- -GCGUGCaCCACG-----GCAAACGA-------CGUCCa -5'
5983 3' -56.5 NC_001806.1 + 148686 0.66 0.862457
Target:  5'- uGCACGggaaGGUGUCGa--GC-GCAGGUg -3'
miRNA:   3'- gCGUGCa---CCACGGCaaaCGaCGUCCA- -5'
5983 3' -56.5 NC_001806.1 + 151537 0.66 0.862457
Target:  5'- gCGCcCGUGGgcccgggcgGCCGgggGCgGCGGGg -3'
miRNA:   3'- -GCGuGCACCa--------CGGCaaaCGaCGUCCa -5'
5983 3' -56.5 NC_001806.1 + 77160 0.67 0.83119
Target:  5'- gGCGCGUGGcccaacacGCCGaccugagcgcccgGCUGCGGGa -3'
miRNA:   3'- gCGUGCACCa-------CGGCaaa----------CGACGUCCa -5'
5983 3' -56.5 NC_001806.1 + 23893 0.67 0.83035
Target:  5'- uGCGCGUgguGGUGCUGUacucgccGCUGCcGGg -3'
miRNA:   3'- gCGUGCA---CCACGGCAaa-----CGACGuCCa -5'
5983 3' -56.5 NC_001806.1 + 136975 0.67 0.813176
Target:  5'- cCGCgaGCGUGGUGCgGUcauggcgGCggccgGCGGGg -3'
miRNA:   3'- -GCG--UGCACCACGgCAaa-----CGa----CGUCCa -5'
5983 3' -56.5 NC_001806.1 + 55286 0.67 0.813176
Target:  5'- aGCACGUGGggGuCCGUUagGUUGgGGGc -3'
miRNA:   3'- gCGUGCACCa-C-GGCAAa-CGACgUCCa -5'
5983 3' -56.5 NC_001806.1 + 137772 0.67 0.804336
Target:  5'- gGC-CGUGGUGUa--UUGCUGguGGa -3'
miRNA:   3'- gCGuGCACCACGgcaAACGACguCCa -5'
5983 3' -56.5 NC_001806.1 + 143278 0.68 0.786194
Target:  5'- uGCGCGggaGGUGUCGguggUGgUGguGGUg -3'
miRNA:   3'- gCGUGCa--CCACGGCaa--ACgACguCCA- -5'
5983 3' -56.5 NC_001806.1 + 22979 0.68 0.767493
Target:  5'- gCGCGCGUGGcUGCgCGa--GCUGCGGu- -3'
miRNA:   3'- -GCGUGCACC-ACG-GCaaaCGACGUCca -5'
5983 3' -56.5 NC_001806.1 + 81463 0.69 0.70877
Target:  5'- cCGCACGgccccuugGGUGCCcugggGgUGCGGGUg -3'
miRNA:   3'- -GCGUGCa-------CCACGGcaaa-CgACGUCCA- -5'
5983 3' -56.5 NC_001806.1 + 144479 0.7 0.678398
Target:  5'- -cCACGUGGUGCUGUggccuguuuUUGCUGCGu-- -3'
miRNA:   3'- gcGUGCACCACGGCA---------AACGACGUcca -5'
5983 3' -56.5 NC_001806.1 + 114264 0.71 0.626096
Target:  5'- gGCGCGUGGUaguggacgggcccGCCaugcucacGCUGCAGGUg -3'
miRNA:   3'- gCGUGCACCA-------------CGGcaaa----CGACGUCCA- -5'
5983 3' -56.5 NC_001806.1 + 44490 0.74 0.440169
Target:  5'- uGCAcgacCGUGGUGCCGUUUGC--CGGGa -3'
miRNA:   3'- gCGU----GCACCACGGCAAACGacGUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.