Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5988 | 5' | -51.8 | NC_001806.1 | + | 147374 | 0.76 | 0.632164 |
Target: 5'- gCCCC-UGCCGgcgcgaggggGGgacgcgUGGACUGGGGGg -3' miRNA: 3'- -GGGGuACGGU----------UCaua---ACCUGACCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 12248 | 0.75 | 0.704871 |
Target: 5'- cCCCCAU-CguAGUAggUGGugUGGGGGa -3' miRNA: 3'- -GGGGUAcGguUCAUa-ACCugACCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 57799 | 0.72 | 0.820308 |
Target: 5'- cCUCCGUGuCCAGGg---GGACUGGAu- -3' miRNA: 3'- -GGGGUAC-GGUUCauaaCCUGACCUcc -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 45504 | 0.71 | 0.884083 |
Target: 5'- gCCCUGUGUgGGGUGaggggugGGGgUGGAGGg -3' miRNA: 3'- -GGGGUACGgUUCAUaa-----CCUgACCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 74037 | 0.71 | 0.891067 |
Target: 5'- gCCCCGagGCCGuucagGUUcGGCUGGAGGa -3' miRNA: 3'- -GGGGUa-CGGUuca--UAAcCUGACCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 143235 | 0.71 | 0.897814 |
Target: 5'- aCCCGUGCUgguGGUGcgGG-UUGGGGGg -3' miRNA: 3'- gGGGUACGGu--UCAUaaCCuGACCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 49613 | 0.71 | 0.897814 |
Target: 5'- uCCCCGc-CCAAGg--UGGAgguuCUGGAGGg -3' miRNA: 3'- -GGGGUacGGUUCauaACCU----GACCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 79245 | 0.7 | 0.904319 |
Target: 5'- aCCCCcgGCCcuGUGgaccuuguugGGGC-GGAGGg -3' miRNA: 3'- -GGGGuaCGGuuCAUaa--------CCUGaCCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 147680 | 0.7 | 0.927876 |
Target: 5'- gCCCCGgggGCCGGGgcgcggGGGCgggccccGGAGGc -3' miRNA: 3'- -GGGGUa--CGGUUCauaa--CCUGa------CCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 24923 | 0.69 | 0.94293 |
Target: 5'- cCCCCGcgGCgGgaAGUugUGGACUgGGAGGc -3' miRNA: 3'- -GGGGUa-CGgU--UCAuaACCUGA-CCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 144018 | 0.69 | 0.951733 |
Target: 5'- aCCCCAacggaaagcgGCgGGGUGUUGGg--GGAGGc -3' miRNA: 3'- -GGGGUa---------CGgUUCAUAACCugaCCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 151266 | 0.68 | 0.966495 |
Target: 5'- gCCCAcGCCGggcGGUGggggccgGGGCcGGGGGg -3' miRNA: 3'- gGGGUaCGGU---UCAUaa-----CCUGaCCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 47604 | 0.68 | 0.966495 |
Target: 5'- uUCCAcGCCGAGcuacGGGCgcgGGAGGa -3' miRNA: 3'- gGGGUaCGGUUCauaaCCUGa--CCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 55062 | 0.68 | 0.969621 |
Target: 5'- cCUCCAUcaCCGcGUG--GGGCUGGAGGg -3' miRNA: 3'- -GGGGUAc-GGUuCAUaaCCUGACCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 37952 | 0.67 | 0.971681 |
Target: 5'- gCCCCGggGCgGGGUcccccaggguugcgAUUGGuuCUGGGGGc -3' miRNA: 3'- -GGGGUa-CGgUUCA--------------UAACCu-GACCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 91903 | 0.67 | 0.975237 |
Target: 5'- uCCCCAcgGCCA--UGggGcGGCUGGAGa -3' miRNA: 3'- -GGGGUa-CGGUucAUaaC-CUGACCUCc -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 26690 | 0.67 | 0.977743 |
Target: 5'- cCCCCAccGCCcGGcg-UGGGCccGGGGGg -3' miRNA: 3'- -GGGGUa-CGGuUCauaACCUGa-CCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 98198 | 0.67 | 0.980056 |
Target: 5'- gCCCGUugGUCGAGg---GGcaGCUGGGGGa -3' miRNA: 3'- gGGGUA--CGGUUCauaaCC--UGACCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 14123 | 0.67 | 0.982185 |
Target: 5'- uCCCCcUGCCGGaca-UGGuuUGGGGGg -3' miRNA: 3'- -GGGGuACGGUUcauaACCugACCUCC- -5' |
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5988 | 5' | -51.8 | NC_001806.1 | + | 50875 | 0.66 | 0.984138 |
Target: 5'- aCCCccGCCAAGUucUGGGC-GGAc- -3' miRNA: 3'- gGGGuaCGGUUCAuaACCUGaCCUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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