miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5989 3' -64.5 NC_001806.1 + 24109 0.66 0.530712
Target:  5'- -gCuGUCCaCgCGGGaCCUGGCCUUCgCCGg -3'
miRNA:   3'- ggGuCAGG-G-GCCC-GGGUCGGAAG-GGC- -5'
5989 3' -64.5 NC_001806.1 + 119631 0.66 0.530712
Target:  5'- cCCCAGcgCCCCacGGGCCCGGgggcgaggaCaUCCUGa -3'
miRNA:   3'- -GGGUCa-GGGG--CCCGGGUCg--------GaAGGGC- -5'
5989 3' -64.5 NC_001806.1 + 22289 0.66 0.527936
Target:  5'- aCCCgcgcguGGUCCCCGGGgacguggcgcuggaCCaGGCCUgcUUCCGg -3'
miRNA:   3'- -GGG------UCAGGGGCCC--------------GGgUCGGA--AGGGC- -5'
5989 3' -64.5 NC_001806.1 + 137682 0.66 0.521481
Target:  5'- cCCCGGcCaCCCacgGGGCgcugCCGGCCUUuaCCCGc -3'
miRNA:   3'- -GGGUCaG-GGG---CCCG----GGUCGGAA--GGGC- -5'
5989 3' -64.5 NC_001806.1 + 70504 0.66 0.521481
Target:  5'- gCCCGaccgCCUgGGGCCCuGGCCc-CCCGa -3'
miRNA:   3'- -GGGUca--GGGgCCCGGG-UCGGaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 65458 0.66 0.521481
Target:  5'- gCCgCGGcCCCCGGGUCCugggGGCg--CCCGc -3'
miRNA:   3'- -GG-GUCaGGGGCCCGGG----UCGgaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 34410 0.66 0.521481
Target:  5'- gCCGGgCCgggCCGGGCCgGGCCgggCCgGg -3'
miRNA:   3'- gGGUCaGG---GGCCCGGgUCGGaa-GGgC- -5'
5989 3' -64.5 NC_001806.1 + 60583 0.67 0.512312
Target:  5'- cCCUGGaUCCCCGGGacguuaCCgggGGCCacCCCGg -3'
miRNA:   3'- -GGGUC-AGGGGCCCg-----GG---UCGGaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 49731 0.67 0.512312
Target:  5'- cCCUAG-CCCUGGGgcaUCCGGCCggguuuuaCCCGu -3'
miRNA:   3'- -GGGUCaGGGGCCC---GGGUCGGaa------GGGC- -5'
5989 3' -64.5 NC_001806.1 + 64953 0.67 0.512312
Target:  5'- aCCGG-CgUCGGcGCCCgGGCCgggggUCCCGg -3'
miRNA:   3'- gGGUCaGgGGCC-CGGG-UCGGa----AGGGC- -5'
5989 3' -64.5 NC_001806.1 + 597 0.67 0.512312
Target:  5'- gCCCccUCCCCaGcCCCAGCCcUCCCc -3'
miRNA:   3'- -GGGucAGGGGcCcGGGUCGGaAGGGc -5'
5989 3' -64.5 NC_001806.1 + 36835 0.67 0.512312
Target:  5'- aCCCAGgCCguacgCCGGGCCCAcccccgccaucuGCCgugaCCCa -3'
miRNA:   3'- -GGGUCaGG-----GGCCCGGGU------------CGGaa--GGGc -5'
5989 3' -64.5 NC_001806.1 + 86348 0.67 0.503211
Target:  5'- -gCAGUCCCuCGGGCaggggucgcgCCAGCCacUCCUc -3'
miRNA:   3'- ggGUCAGGG-GCCCG----------GGUCGGa-AGGGc -5'
5989 3' -64.5 NC_001806.1 + 31095 0.67 0.494181
Target:  5'- aCCCGG-CUgCGGGCCgCGGUC--CCCGg -3'
miRNA:   3'- -GGGUCaGGgGCCCGG-GUCGGaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 53256 0.67 0.494181
Target:  5'- cCCCGGgCCgcaCCGGGCCCccGCC--CCCGc -3'
miRNA:   3'- -GGGUCaGG---GGCCCGGGu-CGGaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 137818 0.67 0.494181
Target:  5'- cCCCAGUa--CGcGGCCC-GCCUgcggCCCGu -3'
miRNA:   3'- -GGGUCAgggGC-CCGGGuCGGAa---GGGC- -5'
5989 3' -64.5 NC_001806.1 + 3369 0.67 0.494181
Target:  5'- cCCCGGccagCCCCGGGa-CGGCCgccaggUCgCCGu -3'
miRNA:   3'- -GGGUCa---GGGGCCCggGUCGGa-----AG-GGC- -5'
5989 3' -64.5 NC_001806.1 + 131572 0.67 0.485226
Target:  5'- aCCGGUuuccgcgacCCaCCGGGCCCGGCCaggCaCGg -3'
miRNA:   3'- gGGUCA---------GG-GGCCCGGGUCGGaa-GgGC- -5'
5989 3' -64.5 NC_001806.1 + 30255 0.67 0.485226
Target:  5'- gCCGccUCCgGGGCCCGGCC--CCCGc -3'
miRNA:   3'- gGGUcaGGGgCCCGGGUCGGaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 75259 0.67 0.476348
Target:  5'- -aCGG-CCCUGGGCgCGGCCgccagcgaCCCGg -3'
miRNA:   3'- ggGUCaGGGGCCCGgGUCGGaa------GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.