miRNA display CGI


Results 61 - 80 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5989 5' -51 NC_001806.1 + 82151 0.7 0.928866
Target:  5'- gGUCGccGAGGGAC-AGCCCcgUCGUCUc -3'
miRNA:   3'- -CAGCu-CUUCCUGuUUGGGuuGGCAGG- -5'
5989 5' -51 NC_001806.1 + 105715 0.7 0.928866
Target:  5'- cGUCGGGgcGG-CAAGCCCuGCCauagCCa -3'
miRNA:   3'- -CAGCUCuuCCuGUUUGGGuUGGca--GG- -5'
5989 5' -51 NC_001806.1 + 22723 0.71 0.923375
Target:  5'- -gCGGGggGcGACGAcCCCGacGCCGcCCg -3'
miRNA:   3'- caGCUCuuC-CUGUUuGGGU--UGGCaGG- -5'
5989 5' -51 NC_001806.1 + 88061 0.71 0.923375
Target:  5'- -aCGGGcguGGGCAGGCCCcuGGCCG-CCa -3'
miRNA:   3'- caGCUCuu-CCUGUUUGGG--UUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 86027 0.71 0.911641
Target:  5'- -cCGGGGAGGGCAGGgCCGcggggggggcggGCuCGUCCc -3'
miRNA:   3'- caGCUCUUCCUGUUUgGGU------------UG-GCAGG- -5'
5989 5' -51 NC_001806.1 + 21981 0.71 0.911641
Target:  5'- gGUCGAGcuGGACGccGACgCGACC-UCCg -3'
miRNA:   3'- -CAGCUCuuCCUGU--UUGgGUUGGcAGG- -5'
5989 5' -51 NC_001806.1 + 13078 0.71 0.911028
Target:  5'- cUCGGGGaugaagcGGGGCAGcauCCCGauGCUGUCCa -3'
miRNA:   3'- cAGCUCU-------UCCUGUUu--GGGU--UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 57748 0.71 0.905399
Target:  5'- cGUCuGGAgcggcGGGACGGGCC--GCCGUCCc -3'
miRNA:   3'- -CAGcUCU-----UCCUGUUUGGguUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 91159 0.71 0.897584
Target:  5'- uUCGAGGgccAGGACAcggccgcGGCCCGcgccaacGCCGUCg -3'
miRNA:   3'- cAGCUCU---UCCUGU-------UUGGGU-------UGGCAGg -5'
5989 5' -51 NC_001806.1 + 49291 0.72 0.89218
Target:  5'- -aCGGGAAGGcccGCGAGCCCGACgacggcgcgCGUCg -3'
miRNA:   3'- caGCUCUUCC---UGUUUGGGUUG---------GCAGg -5'
5989 5' -51 NC_001806.1 + 11332 0.72 0.89218
Target:  5'- gGUCcacGggGGGCGucggaAGCCCAGCCGcCCc -3'
miRNA:   3'- -CAGcu-CuuCCUGU-----UUGGGUUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 53781 0.72 0.885208
Target:  5'- cGUCGAcGAGccgcaGGCAGGCCCGaauGCCGUCUc -3'
miRNA:   3'- -CAGCUcUUC-----CUGUUUGGGU---UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 113297 0.72 0.885208
Target:  5'- --gGGGggGGACGuuccCCCGGCCGgCCc -3'
miRNA:   3'- cagCUCuuCCUGUuu--GGGUUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 55391 0.73 0.846925
Target:  5'- aUUGGGggGGACGGACCCAuggaguaaCG-CCa -3'
miRNA:   3'- cAGCUCuuCCUGUUUGGGUug------GCaGG- -5'
5989 5' -51 NC_001806.1 + 20788 0.73 0.821445
Target:  5'- -aUGAGcccGAGGACGc-CCCGAUCGUCCa -3'
miRNA:   3'- caGCUC---UUCCUGUuuGGGUUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 70492 0.74 0.794336
Target:  5'- gGUCG---GGGACAcGCCCGACCG-CCu -3'
miRNA:   3'- -CAGCucuUCCUGUuUGGGUUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 28763 0.74 0.78498
Target:  5'- gGUCGGGAuccaaAGGACGGACCCAgACCa-CCu -3'
miRNA:   3'- -CAGCUCU-----UCCUGUUUGGGU-UGGcaGG- -5'
5989 5' -51 NC_001806.1 + 71928 0.75 0.765844
Target:  5'- gGUCGAGggGGGCGAguggacgcGCgCGACCGcgggCCc -3'
miRNA:   3'- -CAGCUCuuCCUGUU--------UGgGUUGGCa---GG- -5'
5989 5' -51 NC_001806.1 + 140537 0.75 0.756083
Target:  5'- -aCGGGGacggcGGGGCAGAgCCGcCCGUCCg -3'
miRNA:   3'- caGCUCU-----UCCUGUUUgGGUuGGCAGG- -5'
5989 5' -51 NC_001806.1 + 74062 0.75 0.746208
Target:  5'- --gGAGGAGGuGCGGACCCAGgcCCGUCg -3'
miRNA:   3'- cagCUCUUCC-UGUUUGGGUU--GGCAGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.