Results 81 - 85 of 85 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5989 | 5' | -51 | NC_001806.1 | + | 5876 | 0.68 | 0.978295 |
|
Target: 5'- -cCGGGAccaacGGGACGgcgggcGGCCCAaggGCCGcCCg -3' miRNA: 3'- caGCUCU-----UCCUGU------UUGGGU---UGGCaGG- -5' |
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| 5989 | 5' | -51 | NC_001806.1 | + | 5495 | 0.67 | 0.98634 |
|
Target: 5'- -gCGGGAAGGAgGAGCagcggaGGCCG-CCg -3' miRNA: 3'- caGCUCUUCCUgUUUGgg----UUGGCaGG- -5' |
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| 5989 | 5' | -51 | NC_001806.1 | + | 4583 | 0.68 | 0.975826 |
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Target: 5'- -aCGAcGAGGACGagGACCCGGa-GUCCg -3' miRNA: 3'- caGCUcUUCCUGU--UUGGGUUggCAGG- -5' |
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| 5989 | 5' | -51 | NC_001806.1 | + | 4421 | 0.68 | 0.975826 |
|
Target: 5'- --aGAGggGGGguGGCCCGggcgggggcGgCGUCCg -3' miRNA: 3'- cagCUCuuCCUguUUGGGU---------UgGCAGG- -5' |
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| 5989 | 5' | -51 | NC_001806.1 | + | 1700 | 0.7 | 0.934105 |
|
Target: 5'- cGUCGGugguccccGAGGcCGccGCCCGGCCGUCCa -3' miRNA: 3'- -CAGCUc-------UUCCuGUu-UGGGUUGGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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