miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5989 5' -51 NC_001806.1 + 90838 0.66 0.994713
Target:  5'- uUCGAGgcGGuCGuggGACCC-GCCG-CCg -3'
miRNA:   3'- cAGCUCuuCCuGU---UUGGGuUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 93913 0.66 0.994713
Target:  5'- --aGAGggGGACcccgGGGCUCAGCCagacgCCg -3'
miRNA:   3'- cagCUCuuCCUG----UUUGGGUUGGca---GG- -5'
5989 5' -51 NC_001806.1 + 65162 0.66 0.994713
Target:  5'- aGUCG-GAAucGGACGA--CCggUCGUCCg -3'
miRNA:   3'- -CAGCuCUU--CCUGUUugGGuuGGCAGG- -5'
5989 5' -51 NC_001806.1 + 97186 0.66 0.994713
Target:  5'- cGUCGAGGAGGugGAcgcgcGCUCGGuguacCCGUa- -3'
miRNA:   3'- -CAGCUCUUCCugUU-----UGGGUU-----GGCAgg -5'
5989 5' -51 NC_001806.1 + 68625 0.66 0.995457
Target:  5'- cGUgGAGu-GGAUAGACCgcuggcaAACCGUCa -3'
miRNA:   3'- -CAgCUCuuCCUGUUUGGg------UUGGCAGg -5'
5989 5' -51 NC_001806.1 + 66816 0.67 0.990693
Target:  5'- -cCGAGcGGGGCcGGCCCGggugGCCGgugugcgCCg -3'
miRNA:   3'- caGCUCuUCCUGuUUGGGU----UGGCa------GG- -5'
5989 5' -51 NC_001806.1 + 113764 0.67 0.990693
Target:  5'- -gCGGGcAGGGCAAGCCgAGCUGa-- -3'
miRNA:   3'- caGCUCuUCCUGUUUGGgUUGGCagg -5'
5989 5' -51 NC_001806.1 + 20919 0.68 0.982667
Target:  5'- -gCGGGAGGGGgA---UCGGCCGUCCc -3'
miRNA:   3'- caGCUCUUCCUgUuugGGUUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 144813 0.67 0.984587
Target:  5'- -cCGGGAcgaGGGGCccccGACCgCGGCgGUCCg -3'
miRNA:   3'- caGCUCU---UCCUGu---UUGG-GUUGgCAGG- -5'
5989 5' -51 NC_001806.1 + 133243 0.67 0.986172
Target:  5'- aUCGAGAcggccguGGGAgccgugcuUAGGgCCAacGCCGUCCg -3'
miRNA:   3'- cAGCUCU-------UCCU--------GUUUgGGU--UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 5495 0.67 0.98634
Target:  5'- -gCGGGAAGGAgGAGCagcggaGGCCG-CCg -3'
miRNA:   3'- caGCUCUUCCUgUUUGgg----UUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 51130 0.67 0.98634
Target:  5'- uGUCGGGGAGGcGCGcGACCgGGCUGggaggCCc -3'
miRNA:   3'- -CAGCUCUUCC-UGU-UUGGgUUGGCa----GG- -5'
5989 5' -51 NC_001806.1 + 148812 0.67 0.98634
Target:  5'- -gCGGGggGGGCuccCCCccgaGACCGcCCc -3'
miRNA:   3'- caGCUCuuCCUGuuuGGG----UUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 104965 0.67 0.987937
Target:  5'- uGUUGGGGgcccuuccggAGGACAGACacauCGACCG-CCu -3'
miRNA:   3'- -CAGCUCU----------UCCUGUUUGg---GUUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 134237 0.67 0.987937
Target:  5'- aGUCGgagcGGggGGGCGGcCCCGGCag-CCg -3'
miRNA:   3'- -CAGC----UCuuCCUGUUuGGGUUGgcaGG- -5'
5989 5' -51 NC_001806.1 + 36343 0.67 0.987937
Target:  5'- -cCGccGAGGACGcgccgGACCCAGagaCGUCCu -3'
miRNA:   3'- caGCucUUCCUGU-----UUGGGUUg--GCAGG- -5'
5989 5' -51 NC_001806.1 + 94812 0.67 0.989384
Target:  5'- -gCGGGggGcGACGGGcagcCCCAcCCGUCg -3'
miRNA:   3'- caGCUCuuC-CUGUUU----GGGUuGGCAGg -5'
5989 5' -51 NC_001806.1 + 77153 0.67 0.989384
Target:  5'- cUCGGGggGcGCGuGGCCCAACaCG-CCg -3'
miRNA:   3'- cAGCUCuuCcUGU-UUGGGUUG-GCaGG- -5'
5989 5' -51 NC_001806.1 + 91274 0.67 0.989384
Target:  5'- -cCGAGguGGACGAcgccgGCCCGGCgGaCCc -3'
miRNA:   3'- caGCUCuuCCUGUU-----UGGGUUGgCaGG- -5'
5989 5' -51 NC_001806.1 + 65638 0.67 0.990693
Target:  5'- -gCGAGAGGGGC---CCCGGCgG-CCu -3'
miRNA:   3'- caGCUCUUCCUGuuuGGGUUGgCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.