miRNA display CGI


Results 101 - 120 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 3' -57.6 NC_001806.1 + 117692 0.67 0.776047
Target:  5'- cUCgGGGCC-C-GAGCCCGCgucggcccccuCCGAGGCc -3'
miRNA:   3'- -AGgCCCGGaGuCUUGGGUG-----------GGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 55720 0.67 0.776047
Target:  5'- cUCCGGGCUggCGGcuGACCCGggggacCCCGAu-- -3'
miRNA:   3'- -AGGCCCGGa-GUC--UUGGGU------GGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 80831 0.67 0.785202
Target:  5'- gCCGaGGCCUCG--ACCCACUCccuggGGAACc -3'
miRNA:   3'- aGGC-CCGGAGUcuUGGGUGGG-----CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 44451 0.67 0.803101
Target:  5'- -gCGGGCC-CGGcgUCCGCgUGGAGCa -3'
miRNA:   3'- agGCCCGGaGUCuuGGGUGgGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 135041 0.67 0.794223
Target:  5'- uUCCGGGCgaccgcgaUCuGGACCgGCCCcgcgGGGACg -3'
miRNA:   3'- -AGGCCCGg-------AGuCUUGGgUGGG----CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 114840 0.67 0.794223
Target:  5'- cCUGGGCCagcucCAGGugGCCCGgCaCGAAACu -3'
miRNA:   3'- aGGCCCGGa----GUCU--UGGGUgG-GCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 95431 0.67 0.794223
Target:  5'- -gCGGGCC-CGGGggGCagggGCCCGAGACg -3'
miRNA:   3'- agGCCCGGaGUCU--UGgg--UGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 92930 0.67 0.794223
Target:  5'- -gCGGGCCUggaggcCGGGGCCCGCgCGcugauGGACg -3'
miRNA:   3'- agGCCCGGA------GUCUUGGGUGgGC-----UUUG- -5'
5990 3' -57.6 NC_001806.1 + 31103 0.67 0.776047
Target:  5'- -gCGGGCCgCGGucCCCGgCUGGAGCc -3'
miRNA:   3'- agGCCCGGaGUCuuGGGUgGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 30260 0.67 0.794223
Target:  5'- cUCCgGGGCC-CGGccCCCGcgccccggccCCCGggGCg -3'
miRNA:   3'- -AGG-CCCGGaGUCuuGGGU----------GGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 49648 0.66 0.852914
Target:  5'- gCCGGGCC-CGGAGCuCCGggcggcauuCCCGuuGg -3'
miRNA:   3'- aGGCCCGGaGUCUUG-GGU---------GGGCuuUg -5'
5990 3' -57.6 NC_001806.1 + 34415 0.66 0.852914
Target:  5'- gCCGGGCCgggCcGGGCCgGgCCGGgugGGCg -3'
miRNA:   3'- aGGCCCGGa--GuCUUGGgUgGGCU---UUG- -5'
5990 3' -57.6 NC_001806.1 + 22053 0.66 0.852914
Target:  5'- gCCGuGGCC-CGGcgccgGGCCCccgccCCCGggGCg -3'
miRNA:   3'- aGGC-CCGGaGUC-----UUGGGu----GGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 9523 0.66 0.837018
Target:  5'- gUCGGGUCUCuccgggGGGGCCaGCCaCGGGACc -3'
miRNA:   3'- aGGCCCGGAG------UCUUGGgUGG-GCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 4742 0.66 0.837018
Target:  5'- cCCGGGCC--GGGGCCCggucGCCgGcgGCg -3'
miRNA:   3'- aGGCCCGGagUCUUGGG----UGGgCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 151015 0.66 0.837018
Target:  5'- gCCGaGGCC-CAGAccaccaggugGCgCACCCGGAc- -3'
miRNA:   3'- aGGC-CCGGaGUCU----------UGgGUGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 64259 0.66 0.837018
Target:  5'- uUCaGGGCCgauugCAGccCCCGCUCGAccAGCg -3'
miRNA:   3'- -AGgCCCGGa----GUCuuGGGUGGGCU--UUG- -5'
5990 3' -57.6 NC_001806.1 + 21507 0.66 0.837018
Target:  5'- aCCGGGCC------CCgGCCCGggGCc -3'
miRNA:   3'- aGGCCCGGagucuuGGgUGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 109237 0.66 0.828794
Target:  5'- gCCGGGCggggCGGAAUCCuggGCCCcGGGCa -3'
miRNA:   3'- aGGCCCGga--GUCUUGGG---UGGGcUUUG- -5'
5990 3' -57.6 NC_001806.1 + 68393 0.66 0.828794
Target:  5'- aCCGGGCC-CAcGGGCUU-CCgGAGACg -3'
miRNA:   3'- aGGCCCGGaGU-CUUGGGuGGgCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.