miRNA display CGI


Results 81 - 100 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 3' -57.6 NC_001806.1 + 70859 0.68 0.728558
Target:  5'- -gCGcGGCCgCGGGACCCgaGCCCGugGCc -3'
miRNA:   3'- agGC-CCGGaGUCUUGGG--UGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 120103 0.68 0.728558
Target:  5'- cUCCGGGCC-CuGGGCcaggCCAUCCGGGccGCg -3'
miRNA:   3'- -AGGCCCGGaGuCUUG----GGUGGGCUU--UG- -5'
5990 3' -57.6 NC_001806.1 + 136534 0.68 0.728558
Target:  5'- -aCGGGCCgcUCGGG--CCGCCCGgcGCa -3'
miRNA:   3'- agGCCCGG--AGUCUugGGUGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 110582 0.68 0.71878
Target:  5'- cCCGGGUgucuuugauCUCGGGAUCCugCUGAcguaAGCg -3'
miRNA:   3'- aGGCCCG---------GAGUCUUGGGugGGCU----UUG- -5'
5990 3' -57.6 NC_001806.1 + 72560 0.68 0.71878
Target:  5'- --gGGGCC-CGGGGCCaCACCCGcccACa -3'
miRNA:   3'- aggCCCGGaGUCUUGG-GUGGGCuu-UG- -5'
5990 3' -57.6 NC_001806.1 + 106243 0.68 0.717798
Target:  5'- cCCGGGCCUgGGuAAcguuuucggccguCCCugacCCCGAGGCc -3'
miRNA:   3'- aGGCCCGGAgUC-UU-------------GGGu---GGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 147083 0.68 0.717798
Target:  5'- uUCCGGGCacacuucCUCGGccCCCgcgGCCCaGAAGCa -3'
miRNA:   3'- -AGGCCCG-------GAGUCuuGGG---UGGG-CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 134658 0.69 0.70893
Target:  5'- gUCCucguuGGCCgUCAGGACcgCCACCgCGAAGCc -3'
miRNA:   3'- -AGGc----CCGG-AGUCUUG--GGUGG-GCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 30659 0.69 0.70893
Target:  5'- -gUGGGCC-CGGGACCCcCCUGAc-- -3'
miRNA:   3'- agGCCCGGaGUCUUGGGuGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 72608 0.69 0.699016
Target:  5'- cCCGGGCCcgucgcgacgaCAGGGCCU--CCGAGACa -3'
miRNA:   3'- aGGCCCGGa----------GUCUUGGGugGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 45485 0.69 0.699016
Target:  5'- gCCGGGCacgcCuGAACCCGCCCu---- -3'
miRNA:   3'- aGGCCCGga--GuCUUGGGUGGGcuuug -5'
5990 3' -57.6 NC_001806.1 + 2938 0.69 0.699016
Target:  5'- cUCCGGGCggCcGGGCCgGgCCGGGACu -3'
miRNA:   3'- -AGGCCCGgaGuCUUGGgUgGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 126892 0.69 0.699016
Target:  5'- cUCgGGGCCgCAGGACCCAgCa-AGGCg -3'
miRNA:   3'- -AGgCCCGGaGUCUUGGGUgGgcUUUG- -5'
5990 3' -57.6 NC_001806.1 + 34537 0.69 0.689047
Target:  5'- gCCGGGCCgcucguaAGAGCCgCgACCCGGc-- -3'
miRNA:   3'- aGGCCCGGag-----UCUUGG-G-UGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 57039 0.69 0.689047
Target:  5'- gCCGGGCC-CGGGGCCgGggccCCCGGcuGCg -3'
miRNA:   3'- aGGCCCGGaGUCUUGGgU----GGGCUu-UG- -5'
5990 3' -57.6 NC_001806.1 + 74899 0.69 0.689047
Target:  5'- -gCGGGCUggUCGG-ACCUcCCCGAGGCc -3'
miRNA:   3'- agGCCCGG--AGUCuUGGGuGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 79248 0.69 0.689047
Target:  5'- cCCGGcCCUguGGACCUugUUGggGCg -3'
miRNA:   3'- aGGCCcGGAguCUUGGGugGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 84336 0.69 0.689047
Target:  5'- cUCCGGGCCUCcguGGucCgCUACUCGGAAa -3'
miRNA:   3'- -AGGCCCGGAG---UCuuG-GGUGGGCUUUg -5'
5990 3' -57.6 NC_001806.1 + 111998 0.69 0.689047
Target:  5'- gCCGGGCC-CuGAACgCCGCCUucAGCc -3'
miRNA:   3'- aGGCCCGGaGuCUUG-GGUGGGcuUUG- -5'
5990 3' -57.6 NC_001806.1 + 116572 0.69 0.689047
Target:  5'- aUCCGGGaCCU--GAACCCcaGCCCcaGAAACc -3'
miRNA:   3'- -AGGCCC-GGAguCUUGGG--UGGG--CUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.