miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 3' -57.6 NC_001806.1 + 57646 0.7 0.648794
Target:  5'- aCgGGGUUUgGGGGCCCcCCCGGAAg -3'
miRNA:   3'- aGgCCCGGAgUCUUGGGuGGGCUUUg -5'
5990 3' -57.6 NC_001806.1 + 59618 0.7 0.60833
Target:  5'- gCCgGGGCCUUGGGGCCCcgGCCgGguACu -3'
miRNA:   3'- aGG-CCCGGAGUCUUGGG--UGGgCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 59989 0.66 0.844265
Target:  5'- cUCuGGCCUCgGGGACCCGggggacggccgggUCCGGAGCc -3'
miRNA:   3'- aGGcCCGGAG-UCUUGGGU-------------GGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 63712 0.75 0.351984
Target:  5'- gCUGGGCCUCuucgccggcgAGGACCCccuucAUCCGGAGCa -3'
miRNA:   3'- aGGCCCGGAG----------UCUUGGG-----UGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 64259 0.66 0.837018
Target:  5'- uUCaGGGCCgauugCAGccCCCGCUCGAccAGCg -3'
miRNA:   3'- -AGgCCCGGa----GUCuuGGGUGGGCU--UUG- -5'
5990 3' -57.6 NC_001806.1 + 64874 0.66 0.860572
Target:  5'- cCCGGGCCacggCGGGAUCgGCCgCaAGACc -3'
miRNA:   3'- aGGCCCGGa---GUCUUGGgUGG-GcUUUG- -5'
5990 3' -57.6 NC_001806.1 + 64966 0.67 0.776047
Target:  5'- cCCGGGCCggggguccCGGGGCaaaCAUCCaGggGCg -3'
miRNA:   3'- aGGCCCGGa-------GUCUUGg--GUGGG-CuuUG- -5'
5990 3' -57.6 NC_001806.1 + 66800 0.67 0.820394
Target:  5'- gCCGGgaggaucacgGCCgagCGGGGCCgGCCCGGGu- -3'
miRNA:   3'- aGGCC----------CGGa--GUCUUGGgUGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 67904 0.68 0.747861
Target:  5'- cCCGGGCCU--GggUCCGCgaacgggaugCCGGGACu -3'
miRNA:   3'- aGGCCCGGAguCuuGGGUG----------GGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 68100 0.66 0.860572
Target:  5'- gCCGGGCgUCAuggcagaccgcGGucuCCCGUCCGAGGCc -3'
miRNA:   3'- aGGCCCGgAGU-----------CUu--GGGUGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 68393 0.66 0.828794
Target:  5'- aCCGGGCC-CAcGGGCUU-CCgGAGACg -3'
miRNA:   3'- aGGCCCGGaGU-CUUGGGuGGgCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 70126 0.67 0.815274
Target:  5'- aCUGGGCgcgcugaucacccucCUC-GAACcggCCGCCCGggGCg -3'
miRNA:   3'- aGGCCCG---------------GAGuCUUG---GGUGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 70859 0.68 0.728558
Target:  5'- -gCGcGGCCgCGGGACCCgaGCCCGugGCc -3'
miRNA:   3'- agGC-CCGGaGUCUUGGG--UGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 71259 0.66 0.844265
Target:  5'- aCCGGaGUCUCccaGGGACCUggagguccgcgacGCCgGAAACa -3'
miRNA:   3'- aGGCC-CGGAG---UCUUGGG-------------UGGgCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 71786 0.66 0.845061
Target:  5'- aCCGGuG-CUCGGAaccaguucgcGCCCgACCUGGAGCc -3'
miRNA:   3'- aGGCC-CgGAGUCU----------UGGG-UGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 72372 0.7 0.648794
Target:  5'- gUCGGGCC-CGGAACCCGcggcuCCUGcGGACu -3'
miRNA:   3'- aGGCCCGGaGUCUUGGGU-----GGGC-UUUG- -5'
5990 3' -57.6 NC_001806.1 + 72560 0.68 0.71878
Target:  5'- --gGGGCC-CGGGGCCaCACCCGcccACa -3'
miRNA:   3'- aggCCCGGaGUCUUGG-GUGGGCuu-UG- -5'
5990 3' -57.6 NC_001806.1 + 72608 0.69 0.699016
Target:  5'- cCCGGGCCcgucgcgacgaCAGGGCCU--CCGAGACa -3'
miRNA:   3'- aGGCCCGGa----------GUCUUGGGugGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 73078 0.7 0.628556
Target:  5'- uUCCGGagccuguccucGCCUCGGcACCC-CCCGAc-- -3'
miRNA:   3'- -AGGCC-----------CGGAGUCuUGGGuGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 73217 0.66 0.860572
Target:  5'- cCCGGGCg-CAGAccucGCCCAgcugUUCGAGGCc -3'
miRNA:   3'- aGGCCCGgaGUCU----UGGGU----GGGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.