miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 3' -57.6 NC_001806.1 + 97371 0.76 0.300815
Target:  5'- cCCGGGCCaCGGcGCcgaCCACCCGGAACc -3'
miRNA:   3'- aGGCCCGGaGUCuUG---GGUGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 95431 0.67 0.794223
Target:  5'- -gCGGGCC-CGGGggGCagggGCCCGAGACg -3'
miRNA:   3'- agGCCCGGaGUCU--UGgg--UGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 94551 0.73 0.462265
Target:  5'- gUCGGGCCUUAucguCCC-CCCGGAGCu -3'
miRNA:   3'- aGGCCCGGAGUcuu-GGGuGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 94194 0.72 0.499707
Target:  5'- gCCGGGCCUgGaGGCCCAggCCGggGCc -3'
miRNA:   3'- aGGCCCGGAgUcUUGGGUg-GGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 92930 0.67 0.794223
Target:  5'- -gCGGGCCUggaggcCGGGGCCCGCgCGcugauGGACg -3'
miRNA:   3'- agGCCCGGA------GUCUUGGGUGgGC-----UUUG- -5'
5990 3' -57.6 NC_001806.1 + 90892 0.66 0.845061
Target:  5'- gCCGuGGCCcgcgCGGccGCCCACCUGGcguuuGACg -3'
miRNA:   3'- aGGC-CCGGa---GUCu-UGGGUGGGCU-----UUG- -5'
5990 3' -57.6 NC_001806.1 + 89342 0.68 0.770492
Target:  5'- -gCGGGCCgccgccacCGGAAaacaucgcgguuguuCCCACCCGAAc- -3'
miRNA:   3'- agGCCCGGa-------GUCUU---------------GGGUGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 88991 0.7 0.618438
Target:  5'- gCCGcGGCC--AGAAgCCGCCCGAcccGACg -3'
miRNA:   3'- aGGC-CCGGagUCUUgGGUGGGCU---UUG- -5'
5990 3' -57.6 NC_001806.1 + 84907 0.73 0.435174
Target:  5'- gUCGGGCCUCccggaAGAGCCUgccgccucacGCCCGcAAACa -3'
miRNA:   3'- aGGCCCGGAG-----UCUUGGG----------UGGGC-UUUG- -5'
5990 3' -57.6 NC_001806.1 + 84336 0.69 0.689047
Target:  5'- cUCCGGGCCUCcguGGucCgCUACUCGGAAa -3'
miRNA:   3'- -AGGCCCGGAG---UCuuG-GGUGGGCUUUg -5'
5990 3' -57.6 NC_001806.1 + 83777 0.74 0.409026
Target:  5'- cCCGGGCCcucaUCGGAACCUuggccuCCgGggGCg -3'
miRNA:   3'- aGGCCCGG----AGUCUUGGGu-----GGgCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 82022 0.74 0.392147
Target:  5'- gUCCGGcauCUUCGGGGCCCAUgaaCCGAAACg -3'
miRNA:   3'- -AGGCCc--GGAGUCUUGGGUG---GGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 81926 0.67 0.819545
Target:  5'- gCCcGGCCUCGGc-CCCGuacgccuCCCGGGACc -3'
miRNA:   3'- aGGcCCGGAGUCuuGGGU-------GGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 81269 0.67 0.794223
Target:  5'- cCCGGGCCUCAcgGggUCCcggGCgUCGAAGg -3'
miRNA:   3'- aGGCCCGGAGU--CuuGGG---UG-GGCUUUg -5'
5990 3' -57.6 NC_001806.1 + 80831 0.67 0.785202
Target:  5'- gCCGaGGCCUCG--ACCCACUCccuggGGAACc -3'
miRNA:   3'- aGGC-CCGGAGUcuUGGGUGGG-----CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 79248 0.69 0.689047
Target:  5'- cCCGGcCCUguGGACCUugUUGggGCg -3'
miRNA:   3'- aGGCCcGGAguCUUGGGugGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 77451 0.69 0.679032
Target:  5'- cCCGGGCgUCcgc-CCCACCCGGc-- -3'
miRNA:   3'- aGGCCCGgAGucuuGGGUGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 76835 0.69 0.658897
Target:  5'- cCCGGGCCUCcuacgcgacAGGGCgCgCGCCUGcAGGCg -3'
miRNA:   3'- aGGCCCGGAG---------UCUUG-G-GUGGGC-UUUG- -5'
5990 3' -57.6 NC_001806.1 + 76347 0.67 0.820394
Target:  5'- gUCCGGGCaggggUCAcccuGCCCuGCCCGAGc- -3'
miRNA:   3'- -AGGCCCGg----AGUcu--UGGG-UGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 76239 0.66 0.860572
Target:  5'- cUCCGGGCCgacgcgCGGcGCgCgAUCgGAAGCg -3'
miRNA:   3'- -AGGCCCGGa-----GUCuUG-GgUGGgCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.