Results 61 - 80 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5990 | 3' | -57.6 | NC_001806.1 | + | 74899 | 0.69 | 0.689047 |
Target: 5'- -gCGGGCUggUCGG-ACCUcCCCGAGGCc -3' miRNA: 3'- agGCCCGG--AGUCuUGGGuGGGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 73964 | 0.73 | 0.435174 |
Target: 5'- gCCGGGCCccUCGGcguaauGCCCGCCCcggccGggGCg -3' miRNA: 3'- aGGCCCGG--AGUCu-----UGGGUGGG-----CuuUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 73768 | 0.7 | 0.648794 |
Target: 5'- uUCUGGaGCgCUCGcaGGCCCACCCGGAc- -3' miRNA: 3'- -AGGCC-CG-GAGUc-UUGGGUGGGCUUug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 73217 | 0.66 | 0.860572 |
Target: 5'- cCCGGGCg-CAGAccucGCCCAgcugUUCGAGGCc -3' miRNA: 3'- aGGCCCGgaGUCU----UGGGU----GGGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 73078 | 0.7 | 0.628556 |
Target: 5'- uUCCGGagccuguccucGCCUCGGcACCC-CCCGAc-- -3' miRNA: 3'- -AGGCC-----------CGGAGUCuUGGGuGGGCUuug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 72608 | 0.69 | 0.699016 |
Target: 5'- cCCGGGCCcgucgcgacgaCAGGGCCU--CCGAGACa -3' miRNA: 3'- aGGCCCGGa----------GUCUUGGGugGGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 72560 | 0.68 | 0.71878 |
Target: 5'- --gGGGCC-CGGGGCCaCACCCGcccACa -3' miRNA: 3'- aggCCCGGaGUCUUGG-GUGGGCuu-UG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 72372 | 0.7 | 0.648794 |
Target: 5'- gUCGGGCC-CGGAACCCGcggcuCCUGcGGACu -3' miRNA: 3'- aGGCCCGGaGUCUUGGGU-----GGGC-UUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 71786 | 0.66 | 0.845061 |
Target: 5'- aCCGGuG-CUCGGAaccaguucgcGCCCgACCUGGAGCc -3' miRNA: 3'- aGGCC-CgGAGUCU----------UGGG-UGGGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 71259 | 0.66 | 0.844265 |
Target: 5'- aCCGGaGUCUCccaGGGACCUggagguccgcgacGCCgGAAACa -3' miRNA: 3'- aGGCC-CGGAG---UCUUGGG-------------UGGgCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 70859 | 0.68 | 0.728558 |
Target: 5'- -gCGcGGCCgCGGGACCCgaGCCCGugGCc -3' miRNA: 3'- agGC-CCGGaGUCUUGGG--UGGGCuuUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 70126 | 0.67 | 0.815274 |
Target: 5'- aCUGGGCgcgcugaucacccucCUC-GAACcggCCGCCCGggGCg -3' miRNA: 3'- aGGCCCG---------------GAGuCUUG---GGUGGGCuuUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 68393 | 0.66 | 0.828794 |
Target: 5'- aCCGGGCC-CAcGGGCUU-CCgGAGACg -3' miRNA: 3'- aGGCCCGGaGU-CUUGGGuGGgCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 68100 | 0.66 | 0.860572 |
Target: 5'- gCCGGGCgUCAuggcagaccgcGGucuCCCGUCCGAGGCc -3' miRNA: 3'- aGGCCCGgAGU-----------CUu--GGGUGGGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 67904 | 0.68 | 0.747861 |
Target: 5'- cCCGGGCCU--GggUCCGCgaacgggaugCCGGGACu -3' miRNA: 3'- aGGCCCGGAguCuuGGGUG----------GGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 66800 | 0.67 | 0.820394 |
Target: 5'- gCCGGgaggaucacgGCCgagCGGGGCCgGCCCGGGu- -3' miRNA: 3'- aGGCC----------CGGa--GUCUUGGgUGGGCUUug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 64966 | 0.67 | 0.776047 |
Target: 5'- cCCGGGCCggggguccCGGGGCaaaCAUCCaGggGCg -3' miRNA: 3'- aGGCCCGGa-------GUCUUGg--GUGGG-CuuUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 64874 | 0.66 | 0.860572 |
Target: 5'- cCCGGGCCacggCGGGAUCgGCCgCaAGACc -3' miRNA: 3'- aGGCCCGGa---GUCUUGGgUGG-GcUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 64259 | 0.66 | 0.837018 |
Target: 5'- uUCaGGGCCgauugCAGccCCCGCUCGAccAGCg -3' miRNA: 3'- -AGgCCCGGa----GUCuuGGGUGGGCU--UUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 63712 | 0.75 | 0.351984 |
Target: 5'- gCUGGGCCUCuucgccggcgAGGACCCccuucAUCCGGAGCa -3' miRNA: 3'- aGGCCCGGAG----------UCUUGGG-----UGGGCUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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