Results 81 - 100 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5990 | 3' | -57.6 | NC_001806.1 | + | 59989 | 0.66 | 0.844265 |
Target: 5'- cUCuGGCCUCgGGGACCCGggggacggccgggUCCGGAGCc -3' miRNA: 3'- aGGcCCGGAG-UCUUGGGU-------------GGGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 59618 | 0.7 | 0.60833 |
Target: 5'- gCCgGGGCCUUGGGGCCCcgGCCgGguACu -3' miRNA: 3'- aGG-CCCGGAGUCUUGGG--UGGgCuuUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 57646 | 0.7 | 0.648794 |
Target: 5'- aCgGGGUUUgGGGGCCCcCCCGGAAg -3' miRNA: 3'- aGgCCCGGAgUCUUGGGuGGGCUUUg -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 57039 | 0.69 | 0.689047 |
Target: 5'- gCCGGGCC-CGGGGCCgGggccCCCGGcuGCg -3' miRNA: 3'- aGGCCCGGaGUCUUGGgU----GGGCUu-UG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 55720 | 0.67 | 0.776047 |
Target: 5'- cUCCGGGCUggCGGcuGACCCGggggacCCCGAu-- -3' miRNA: 3'- -AGGCCCGGa-GUC--UUGGGU------GGGCUuug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 55262 | 0.65 | 0.866553 |
Target: 5'- cCCGGGCCggcccccUCCGCCCaGAGCa -3' miRNA: 3'- aGGCCCGGagucuu-GGGUGGGcUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 53257 | 0.67 | 0.785202 |
Target: 5'- cCCGGGCCgcacCGGGccCCCGCCCc---- -3' miRNA: 3'- aGGCCCGGa---GUCUu-GGGUGGGcuuug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 52939 | 0.71 | 0.558186 |
Target: 5'- -aCGGGUgUgGGGACCCGcCCCGGAGg -3' miRNA: 3'- agGCCCGgAgUCUUGGGU-GGGCUUUg -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 50645 | 0.66 | 0.827961 |
Target: 5'- cCCGGGCgUgCGGGgacgcgcACCgGCgCCGGGACg -3' miRNA: 3'- aGGCCCGgA-GUCU-------UGGgUG-GGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 49648 | 0.66 | 0.852914 |
Target: 5'- gCCGGGCC-CGGAGCuCCGggcggcauuCCCGuuGg -3' miRNA: 3'- aGGCCCGGaGUCUUG-GGU---------GGGCuuUg -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 49370 | 0.68 | 0.747861 |
Target: 5'- cCCGGGCC-C-GAugCgGCCCGuAGCc -3' miRNA: 3'- aGGCCCGGaGuCUugGgUGGGCuUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 47560 | 0.66 | 0.837018 |
Target: 5'- cCCGcgacGGCCUCGGGcUCUACUaCGAAGCg -3' miRNA: 3'- aGGC----CCGGAGUCUuGGGUGG-GCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 46218 | 0.68 | 0.757367 |
Target: 5'- cCCGcGGCCccggcggCGGAGaCCACCCGcgGCa -3' miRNA: 3'- aGGC-CCGGa------GUCUUgGGUGGGCuuUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 45485 | 0.69 | 0.699016 |
Target: 5'- gCCGGGCacgcCuGAACCCGCCCu---- -3' miRNA: 3'- aGGCCCGga--GuCUUGGGUGGGcuuug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 44451 | 0.67 | 0.803101 |
Target: 5'- -gCGGGCC-CGGcgUCCGCgUGGAGCa -3' miRNA: 3'- agGCCCGGaGUCuuGGGUGgGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 42852 | 0.66 | 0.852914 |
Target: 5'- -gCGGGCCUgGuGGGuCCCACCCa---- -3' miRNA: 3'- agGCCCGGAgU-CUU-GGGUGGGcuuug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 35691 | 0.71 | 0.598239 |
Target: 5'- gUCGGGCCUCccGACgUACgCCGAGGCu -3' miRNA: 3'- aGGCCCGGAGucUUGgGUG-GGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 35650 | 0.69 | 0.658897 |
Target: 5'- aCCaGGCUUguGGcCCCACCCGAc-- -3' miRNA: 3'- aGGcCCGGAguCUuGGGUGGGCUuug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 34537 | 0.69 | 0.689047 |
Target: 5'- gCCGGGCCgcucguaAGAGCCgCgACCCGGc-- -3' miRNA: 3'- aGGCCCGGag-----UCUUGG-G-UGGGCUuug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 34415 | 0.66 | 0.852914 |
Target: 5'- gCCGGGCCgggCcGGGCCgGgCCGGgugGGCg -3' miRNA: 3'- aGGCCCGGa--GuCUUGGgUgGGCU---UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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