Results 101 - 120 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5990 | 3' | -57.6 | NC_001806.1 | + | 33053 | 0.71 | 0.588173 |
Target: 5'- cCCGGGCCg-GGAACCCGgaaaagccUCCGggGg -3' miRNA: 3'- aGGCCCGGagUCUUGGGU--------GGGCuuUg -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 32997 | 0.68 | 0.757367 |
Target: 5'- gCCGGGCCgccaCGGGGgCCGgCCGuuGGCg -3' miRNA: 3'- aGGCCCGGa---GUCUUgGGUgGGCu-UUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 32942 | 0.73 | 0.462265 |
Target: 5'- gCCGGGCCguugUGGGGCCCcgGgCCGggGCc -3' miRNA: 3'- aGGCCCGGa---GUCUUGGG--UgGGCuuUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 32645 | 0.66 | 0.851359 |
Target: 5'- -aCGGGCUggugugcuguaaCAcGAGCCCACCCGcgaguGGCg -3' miRNA: 3'- agGCCCGGa-----------GU-CUUGGGUGGGCu----UUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 31103 | 0.67 | 0.776047 |
Target: 5'- -gCGGGCCgCGGucCCCGgCUGGAGCc -3' miRNA: 3'- agGCCCGGaGUCuuGGGUgGGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 30858 | 0.69 | 0.679032 |
Target: 5'- uUCUGGGCCgCGGGGgCCgaggaaguguGCCCGGAAg -3' miRNA: 3'- -AGGCCCGGaGUCUUgGG----------UGGGCUUUg -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 30659 | 0.69 | 0.70893 |
Target: 5'- -gUGGGCC-CGGGACCCcCCUGAc-- -3' miRNA: 3'- agGCCCGGaGUCUUGGGuGGGCUuug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 30260 | 0.67 | 0.794223 |
Target: 5'- cUCCgGGGCC-CGGccCCCGcgccccggccCCCGggGCg -3' miRNA: 3'- -AGG-CCCGGaGUCuuGGGU----------GGGCuuUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 30195 | 0.69 | 0.658897 |
Target: 5'- gUCCGcGGCCgcgUCGGGACCCGCgCGc--- -3' miRNA: 3'- -AGGC-CCGG---AGUCUUGGGUGgGCuuug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 29548 | 0.71 | 0.578137 |
Target: 5'- --aGGGCCcugUCGcccACCCACCCGGAGCc -3' miRNA: 3'- aggCCCGG---AGUcu-UGGGUGGGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 27141 | 0.66 | 0.852914 |
Target: 5'- cCUGGGUCUuccgCGGAGCUC-CCgGGAGCu -3' miRNA: 3'- aGGCCCGGA----GUCUUGGGuGGgCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 27080 | 0.77 | 0.267908 |
Target: 5'- cCCGGGCCcuggcccgCGGAGCCgGCCCGGcgAACu -3' miRNA: 3'- aGGCCCGGa-------GUCUUGGgUGGGCU--UUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 27049 | 0.68 | 0.757367 |
Target: 5'- aUCGGGCCgu---GCCUgggGCCCGAGGCc -3' miRNA: 3'- aGGCCCGGagucuUGGG---UGGGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 26947 | 0.83 | 0.112239 |
Target: 5'- gUCUGGGCCUCGGccGCCCGCCUGgcGCg -3' miRNA: 3'- -AGGCCCGGAGUCu-UGGGUGGGCuuUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 23467 | 0.74 | 0.417633 |
Target: 5'- cCCGGGCCgccgCGGcgcaGGCCCGCCCGc--- -3' miRNA: 3'- aGGCCCGGa---GUC----UUGGGUGGGCuuug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 23429 | 0.66 | 0.837018 |
Target: 5'- cCCgGGGCC-C-GAGCCCGCCCc---- -3' miRNA: 3'- aGG-CCCGGaGuCUUGGGUGGGcuuug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 22881 | 0.67 | 0.794223 |
Target: 5'- cCCGGGgCUggcCGGGGCCCgGCCCGccAGCc -3' miRNA: 3'- aGGCCCgGA---GUCUUGGG-UGGGCu-UUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 22635 | 0.67 | 0.811827 |
Target: 5'- aCCGGGCgagcgcgCGGuGCCCGCCgGguACg -3' miRNA: 3'- aGGCCCGga-----GUCuUGGGUGGgCuuUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 22119 | 0.8 | 0.195937 |
Target: 5'- cCCGGGCCUCuGGGGggCGCCCGAGGCg -3' miRNA: 3'- aGGCCCGGAG-UCUUggGUGGGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 22053 | 0.66 | 0.852914 |
Target: 5'- gCCGuGGCC-CGGcgccgGGCCCccgccCCCGggGCg -3' miRNA: 3'- aGGC-CCGGaGUC-----UUGGGu----GGGCuuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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