miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 3' -57.6 NC_001806.1 + 73217 0.66 0.860572
Target:  5'- cCCGGGCg-CAGAccucGCCCAgcugUUCGAGGCc -3'
miRNA:   3'- aGGCCCGgaGUCU----UGGGU----GGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 130078 0.66 0.860572
Target:  5'- cUCCGGGgcgcgCUCGGAGCCCgucuuuacGCCCa---- -3'
miRNA:   3'- -AGGCCCg----GAGUCUUGGG--------UGGGcuuug -5'
5990 3' -57.6 NC_001806.1 + 64874 0.66 0.860572
Target:  5'- cCCGGGCCacggCGGGAUCgGCCgCaAGACc -3'
miRNA:   3'- aGGCCCGGa---GUCUUGGgUGG-GcUUUG- -5'
5990 3' -57.6 NC_001806.1 + 76239 0.66 0.860572
Target:  5'- cUCCGGGCCgacgcgCGGcGCgCgAUCgGAAGCg -3'
miRNA:   3'- -AGGCCCGGa-----GUCuUG-GgUGGgCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 100104 0.66 0.860572
Target:  5'- cCCGcGGCCggCuGAccGCCCGCCUGGc-- -3'
miRNA:   3'- aGGC-CCGGa-GuCU--UGGGUGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 22053 0.66 0.852914
Target:  5'- gCCGuGGCC-CGGcgccgGGCCCccgccCCCGggGCg -3'
miRNA:   3'- aGGC-CCGGaGUC-----UUGGGu----GGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 131902 0.66 0.852137
Target:  5'- gCCGGccGCCUCcccgcuGGAGCCCcuggagaACCCGAc-- -3'
miRNA:   3'- aGGCC--CGGAG------UCUUGGG-------UGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 21507 0.66 0.837018
Target:  5'- aCCGGGCC------CCgGCCCGggGCc -3'
miRNA:   3'- aGGCCCGGagucuuGGgUGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 64259 0.66 0.837018
Target:  5'- uUCaGGGCCgauugCAGccCCCGCUCGAccAGCg -3'
miRNA:   3'- -AGgCCCGGa----GUCuuGGGUGGGCU--UUG- -5'
5990 3' -57.6 NC_001806.1 + 151015 0.66 0.837018
Target:  5'- gCCGaGGCC-CAGAccaccaggugGCgCACCCGGAc- -3'
miRNA:   3'- aGGC-CCGGaGUCU----------UGgGUGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 4742 0.66 0.837018
Target:  5'- cCCGGGCC--GGGGCCCggucGCCgGcgGCg -3'
miRNA:   3'- aGGCCCGGagUCUUGGG----UGGgCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 9523 0.66 0.837018
Target:  5'- gUCGGGUCUCuccgggGGGGCCaGCCaCGGGACc -3'
miRNA:   3'- aGGCCCGGAG------UCUUGGgUGG-GCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 23429 0.66 0.837018
Target:  5'- cCCgGGGCC-C-GAGCCCGCCCc---- -3'
miRNA:   3'- aGG-CCCGGaGuCUUGGGUGGGcuuug -5'
5990 3' -57.6 NC_001806.1 + 47560 0.66 0.837018
Target:  5'- cCCGcgacGGCCUCGGGcUCUACUaCGAAGCg -3'
miRNA:   3'- aGGC----CCGGAGUCUuGGGUGG-GCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 146194 0.66 0.840257
Target:  5'- cCCGGGCCgcggCucugugguuaacaccAGAGCCUGCCC--AACa -3'
miRNA:   3'- aGGCCCGGa---G---------------UCUUGGGUGGGcuUUG- -5'
5990 3' -57.6 NC_001806.1 + 71259 0.66 0.844265
Target:  5'- aCCGGaGUCUCccaGGGACCUggagguccgcgacGCCgGAAACa -3'
miRNA:   3'- aGGCC-CGGAG---UCUUGGG-------------UGGgCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 59989 0.66 0.844265
Target:  5'- cUCuGGCCUCgGGGACCCGggggacggccgggUCCGGAGCc -3'
miRNA:   3'- aGGcCCGGAG-UCUUGGGU-------------GGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 71786 0.66 0.845061
Target:  5'- aCCGGuG-CUCGGAaccaguucgcGCCCgACCUGGAGCc -3'
miRNA:   3'- aGGCC-CgGAGUCU----------UGGG-UGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 90892 0.66 0.845061
Target:  5'- gCCGuGGCCcgcgCGGccGCCCACCUGGcguuuGACg -3'
miRNA:   3'- aGGC-CCGGa---GUCu-UGGGUGGGCU-----UUG- -5'
5990 3' -57.6 NC_001806.1 + 32645 0.66 0.851359
Target:  5'- -aCGGGCUggugugcuguaaCAcGAGCCCACCCGcgaguGGCg -3'
miRNA:   3'- agGCCCGGa-----------GU-CUUGGGUGGGCu----UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.