miRNA display CGI


Results 121 - 140 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 3' -57.6 NC_001806.1 + 46218 0.68 0.757367
Target:  5'- cCCGcGGCCccggcggCGGAGaCCACCCGcgGCa -3'
miRNA:   3'- aGGC-CCGGa------GUCUUgGGUGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 32997 0.68 0.757367
Target:  5'- gCCGGGCCgccaCGGGGgCCGgCCGuuGGCg -3'
miRNA:   3'- aGGCCCGGa---GUCUUgGGUgGGCu-UUG- -5'
5990 3' -57.6 NC_001806.1 + 81269 0.67 0.794223
Target:  5'- cCCGGGCCUCAcgGggUCCcggGCgUCGAAGg -3'
miRNA:   3'- aGGCCCGGAGU--CuuGGG---UG-GGCUUUg -5'
5990 3' -57.6 NC_001806.1 + 92930 0.67 0.794223
Target:  5'- -gCGGGCCUggaggcCGGGGCCCGCgCGcugauGGACg -3'
miRNA:   3'- agGCCCGGA------GUCUUGGGUGgGC-----UUUG- -5'
5990 3' -57.6 NC_001806.1 + 95431 0.67 0.794223
Target:  5'- -gCGGGCC-CGGGggGCagggGCCCGAGACg -3'
miRNA:   3'- agGCCCGGaGUCU--UGgg--UGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 76347 0.67 0.820394
Target:  5'- gUCCGGGCaggggUCAcccuGCCCuGCCCGAGc- -3'
miRNA:   3'- -AGGCCCGg----AGUcu--UGGG-UGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 66800 0.67 0.820394
Target:  5'- gCCGGgaggaucacgGCCgagCGGGGCCgGCCCGGGu- -3'
miRNA:   3'- aGGCC----------CGGa--GUCUUGGgUGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 81926 0.67 0.819545
Target:  5'- gCCcGGCCUCGGc-CCCGuacgccuCCCGGGACc -3'
miRNA:   3'- aGGcCCGGAGUCuuGGGU-------GGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 70126 0.67 0.815274
Target:  5'- aCUGGGCgcgcugaucacccucCUC-GAACcggCCGCCCGggGCg -3'
miRNA:   3'- aGGCCCG---------------GAGuCUUG---GGUGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 118492 0.67 0.811827
Target:  5'- gUCCuGGCCUCGGAuUCC-CuaGAGACa -3'
miRNA:   3'- -AGGcCCGGAGUCUuGGGuGggCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 111296 0.67 0.811827
Target:  5'- aCCaGGGCCaUCuuGAAUgCACCCGucGCg -3'
miRNA:   3'- aGG-CCCGG-AGu-CUUGgGUGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 22635 0.67 0.811827
Target:  5'- aCCGGGCgagcgcgCGGuGCCCGCCgGguACg -3'
miRNA:   3'- aGGCCCGga-----GUCuUGGGUGGgCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 119594 0.67 0.811827
Target:  5'- -gCGGGUCU-GGAGCCC-CCCGGc-- -3'
miRNA:   3'- agGCCCGGAgUCUUGGGuGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 4100 0.67 0.80661
Target:  5'- aCCGGcgucgcgccuccuccGCCUCGGGcGCCC-CCCaGAGGCc -3'
miRNA:   3'- aGGCC---------------CGGAGUCU-UGGGuGGG-CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 44451 0.67 0.803101
Target:  5'- -gCGGGCC-CGGcgUCCGCgUGGAGCa -3'
miRNA:   3'- agGCCCGGaGUCuuGGGUGgGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 4200 0.67 0.803101
Target:  5'- gCCGGGCCaCGGcuCCCcgcugacguACCCGucGCg -3'
miRNA:   3'- aGGCCCGGaGUCuuGGG---------UGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 13614 0.67 0.794223
Target:  5'- -aCGGGUC-CGGuagGCCCGCCUGGAu- -3'
miRNA:   3'- agGCCCGGaGUCu--UGGGUGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 13014 0.67 0.794223
Target:  5'- aUgGGGCCUUGGgcccGugCCACCCGGc-- -3'
miRNA:   3'- aGgCCCGGAGUC----UugGGUGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 135041 0.67 0.794223
Target:  5'- uUCCGGGCgaccgcgaUCuGGACCgGCCCcgcgGGGACg -3'
miRNA:   3'- -AGGCCCGg-------AGuCUUGGgUGGG----CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 114840 0.67 0.794223
Target:  5'- cCUGGGCCagcucCAGGugGCCCGgCaCGAAACu -3'
miRNA:   3'- aGGCCCGGa----GUCU--UGGGUgG-GCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.