Results 141 - 143 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5990 | 3' | -57.6 | NC_001806.1 | + | 114840 | 0.67 | 0.794223 |
Target: 5'- cCUGGGCCagcucCAGGugGCCCGgCaCGAAACu -3' miRNA: 3'- aGGCCCGGa----GUCU--UGGGUgG-GCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 95431 | 0.67 | 0.794223 |
Target: 5'- -gCGGGCC-CGGGggGCagggGCCCGAGACg -3' miRNA: 3'- agGCCCGGaGUCU--UGgg--UGGGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 16920 | 0.68 | 0.757367 |
Target: 5'- --gGGGCCaUgAGGAaaCACCCGGGACg -3' miRNA: 3'- aggCCCGG-AgUCUUggGUGGGCUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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