miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 5' -58.5 NC_001806.1 + 39839 0.66 0.770901
Target:  5'- uGCGUCgGGGCCcccagaaacaauaGGGUCUGGUUcauuuucAUCCa -3'
miRNA:   3'- -UGCAGaCUCGG-------------UCCGGACCGA-------UAGGc -5'
5990 5' -58.5 NC_001806.1 + 100106 0.67 0.763422
Target:  5'- cGCGgccggCUGAccGCCc-GCCUGGCgGUCCGc -3'
miRNA:   3'- -UGCa----GACU--CGGucCGGACCGaUAGGC- -5'
5990 5' -58.5 NC_001806.1 + 120096 0.67 0.75397
Target:  5'- gGCGUgcCUccGGGCCcuGGGCCaGGCcAUCCGg -3'
miRNA:   3'- -UGCA--GA--CUCGG--UCCGGaCCGaUAGGC- -5'
5990 5' -58.5 NC_001806.1 + 109229 0.67 0.744413
Target:  5'- aGCGUg-GGGCCGGGCggGGCggaAUCCu -3'
miRNA:   3'- -UGCAgaCUCGGUCCGgaCCGa--UAGGc -5'
5990 5' -58.5 NC_001806.1 + 22314 0.67 0.744413
Target:  5'- gGCG-CUGGaCCAGGCCUG-CU-UCCGg -3'
miRNA:   3'- -UGCaGACUcGGUCCGGACcGAuAGGC- -5'
5990 5' -58.5 NC_001806.1 + 149450 0.67 0.715201
Target:  5'- uGCGUCUGAGUCaaagGGGCCauguguauguguUGGggGUCUGu -3'
miRNA:   3'- -UGCAGACUCGG----UCCGG------------ACCgaUAGGC- -5'
5990 5' -58.5 NC_001806.1 + 61443 0.68 0.705312
Target:  5'- aGCGcCgccGGGCuCAGGauaUGGCUGUCCGu -3'
miRNA:   3'- -UGCaGa--CUCG-GUCCgg-ACCGAUAGGC- -5'
5990 5' -58.5 NC_001806.1 + 57120 0.68 0.705312
Target:  5'- -aGUUUGAGCCAGGC--GuaUAUCCGc -3'
miRNA:   3'- ugCAGACUCGGUCCGgaCcgAUAGGC- -5'
5990 5' -58.5 NC_001806.1 + 94324 0.68 0.695363
Target:  5'- gACGUCgcggcguuuuucacgGAGaCCauGGGCCUGGCccgacccUGUCCGu -3'
miRNA:   3'- -UGCAGa--------------CUC-GG--UCCGGACCG-------AUAGGC- -5'
5990 5' -58.5 NC_001806.1 + 73549 0.68 0.685362
Target:  5'- cGCGcCUGAGCCuGGCCgacgUGGCcgcccAUCUGc -3'
miRNA:   3'- -UGCaGACUCGGuCCGG----ACCGa----UAGGC- -5'
5990 5' -58.5 NC_001806.1 + 45452 0.68 0.665239
Target:  5'- cACGUCUGucagaucuGCCagAGGCuaCUGGCUG-CCGg -3'
miRNA:   3'- -UGCAGACu-------CGG--UCCG--GACCGAUaGGC- -5'
5990 5' -58.5 NC_001806.1 + 34403 0.69 0.614613
Target:  5'- gGCGguggCcGGGCCGGGCCgGGCcgggCCGg -3'
miRNA:   3'- -UGCa---GaCUCGGUCCGGaCCGaua-GGC- -5'
5990 5' -58.5 NC_001806.1 + 47257 0.69 0.604496
Target:  5'- gGCGcCUGAGCCAGGCCcaGCUcaugCCc -3'
miRNA:   3'- -UGCaGACUCGGUCCGGacCGAua--GGc -5'
5990 5' -58.5 NC_001806.1 + 26945 0.69 0.604496
Target:  5'- gUGUCUGGGCCucggccgcccGCCUGGCgcgCCGc -3'
miRNA:   3'- uGCAGACUCGGuc--------CGGACCGauaGGC- -5'
5990 5' -58.5 NC_001806.1 + 22039 0.7 0.584331
Target:  5'- uACGUCagcgggGAGCCGuGGCCcGGCg--CCGg -3'
miRNA:   3'- -UGCAGa-----CUCGGU-CCGGaCCGauaGGC- -5'
5990 5' -58.5 NC_001806.1 + 151305 0.72 0.440488
Target:  5'- gGCGg-UGGGCCGGGCCucUGGCg--CCGg -3'
miRNA:   3'- -UGCagACUCGGUCCGG--ACCGauaGGC- -5'
5990 5' -58.5 NC_001806.1 + 129235 0.73 0.380495
Target:  5'- cGCGguucgCUGAGUCAGGCCUGGUcgacuuUGUCa- -3'
miRNA:   3'- -UGCa----GACUCGGUCCGGACCG------AUAGgc -5'
5990 5' -58.5 NC_001806.1 + 14539 0.76 0.27596
Target:  5'- uCGUgUGcuguuucuccggauAGCCAGGCCUGGCUcagacGUCCGu -3'
miRNA:   3'- uGCAgAC--------------UCGGUCCGGACCGA-----UAGGC- -5'
5990 5' -58.5 NC_001806.1 + 94185 0.77 0.240019
Target:  5'- uCGUCUGAgGCCGGGCCUGGaggcccaggCCGg -3'
miRNA:   3'- uGCAGACU-CGGUCCGGACCgaua-----GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.