miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5992 3' -55 NC_001806.1 + 51505 0.66 0.940819
Target:  5'- -aCGGUUCCCGAgaguuuGAUCGUGGa- -3'
miRNA:   3'- ggGCCGGGGGUUauuu--CUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 67503 0.66 0.940819
Target:  5'- uCCCGaCCCCCuggGGAGcccugggccGUCGCGGc- -3'
miRNA:   3'- -GGGCcGGGGGuuaUUUC---------UAGCGCCau -5'
5992 3' -55 NC_001806.1 + 74075 0.66 0.940819
Target:  5'- aCCCaGGCCCgucgggCGAUcGAGggCGCGGUu -3'
miRNA:   3'- -GGG-CCGGGg-----GUUAuUUCuaGCGCCAu -5'
5992 3' -55 NC_001806.1 + 118136 0.66 0.940819
Target:  5'- gCCUGGCCCCCGAUGAucuccUGCa--- -3'
miRNA:   3'- -GGGCCGGGGGUUAUUucua-GCGccau -5'
5992 3' -55 NC_001806.1 + 128859 0.66 0.940819
Target:  5'- gUCCGcGCCCCgGucaugccuuucGUGGGGggCGCGGa- -3'
miRNA:   3'- -GGGC-CGGGGgU-----------UAUUUCuaGCGCCau -5'
5992 3' -55 NC_001806.1 + 25497 0.66 0.920163
Target:  5'- gCCCGaaccCCCCCGA--GGGAgCGCGGg- -3'
miRNA:   3'- -GGGCc---GGGGGUUauUUCUaGCGCCau -5'
5992 3' -55 NC_001806.1 + 43126 0.67 0.914983
Target:  5'- uCCCGGCCgCCCGccucucccCGCGGUu -3'
miRNA:   3'- -GGGCCGG-GGGUuauuucuaGCGCCAu -5'
5992 3' -55 NC_001806.1 + 123833 0.67 0.895658
Target:  5'- aUCCGGCCUCCGcgAgcGGcuucgCGCGGg- -3'
miRNA:   3'- -GGGCCGGGGGUuaUuuCUa----GCGCCau -5'
5992 3' -55 NC_001806.1 + 147331 0.67 0.895658
Target:  5'- cCCCGGCCCUgAGUcGGAGGg-GgGGUGc -3'
miRNA:   3'- -GGGCCGGGGgUUA-UUUCUagCgCCAU- -5'
5992 3' -55 NC_001806.1 + 64030 0.67 0.900863
Target:  5'- gCgGGUCCCCAGguucagcauggcGGGGGUCGaCGGUAc -3'
miRNA:   3'- gGgCCGGGGGUUa-----------UUUCUAGC-GCCAU- -5'
5992 3' -55 NC_001806.1 + 24216 0.67 0.90214
Target:  5'- aCUGGCCCgCCGAc-GGGccCGCGGUGu -3'
miRNA:   3'- gGGCCGGG-GGUUauUUCuaGCGCCAU- -5'
5992 3' -55 NC_001806.1 + 147547 0.67 0.90214
Target:  5'- gCCCGGCCCCCcc--GAGccgCGCGc-- -3'
miRNA:   3'- -GGGCCGGGGGuuauUUCua-GCGCcau -5'
5992 3' -55 NC_001806.1 + 102433 0.67 0.904668
Target:  5'- -gCGGCCCCCGccggccgcgaacugcGUcuuGGGGAgcuugucgUCGCGGUAg -3'
miRNA:   3'- ggGCCGGGGGU---------------UA---UUUCU--------AGCGCCAU- -5'
5992 3' -55 NC_001806.1 + 19217 0.67 0.908387
Target:  5'- aCCCGGgCCCgCuu---GGGUCGUGGg- -3'
miRNA:   3'- -GGGCCgGGG-GuuauuUCUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 54879 0.67 0.908387
Target:  5'- aCCUGGCCgCCgCAGccucGGAGGUCaCGGUAg -3'
miRNA:   3'- -GGGCCGG-GG-GUUa---UUUCUAGcGCCAU- -5'
5992 3' -55 NC_001806.1 + 102256 0.67 0.908387
Target:  5'- -gUGGCCCCgGcUGAGGAaCGCGGc- -3'
miRNA:   3'- ggGCCGGGGgUuAUUUCUaGCGCCau -5'
5992 3' -55 NC_001806.1 + 135610 0.67 0.908387
Target:  5'- uCCagGGCCCCCGcuGUugcgcgccGGAGcUCGCGGUc -3'
miRNA:   3'- -GGg-CCGGGGGU--UA--------UUUCuAGCGCCAu -5'
5992 3' -55 NC_001806.1 + 103689 0.67 0.908387
Target:  5'- cCCCcGCCCUCcGUGGAGGUgGgGGUu -3'
miRNA:   3'- -GGGcCGGGGGuUAUUUCUAgCgCCAu -5'
5992 3' -55 NC_001806.1 + 91781 0.67 0.914395
Target:  5'- uCUCGGCCCU----GAAGcgCGCGGa- -3'
miRNA:   3'- -GGGCCGGGGguuaUUUCuaGCGCCau -5'
5992 3' -55 NC_001806.1 + 17857 0.67 0.914395
Target:  5'- cCCgCGGCCCCCAAccacccccUGGAGAcccugcUCaGcCGGUAc -3'
miRNA:   3'- -GG-GCCGGGGGUU--------AUUUCU------AG-C-GCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.