miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5992 5' -50.7 NC_001806.1 + 29385 0.66 0.995638
Target:  5'- cGUGACGCccagcggGUCGUUCAgcaccaucCCGAUCGu -3'
miRNA:   3'- aCACUGUGa------UAGCAGGUau------GGCUGGU- -5'
5992 5' -50.7 NC_001806.1 + 53529 0.66 0.995213
Target:  5'- cGUGAUugUGUguuuauuauuuuggGUCCGUGCCgGACCc -3'
miRNA:   3'- aCACUGugAUAg-------------CAGGUAUGG-CUGGu -5'
5992 5' -50.7 NC_001806.1 + 121005 0.66 0.994911
Target:  5'- gUGUGGCGC-GUCGUUCGgGCgGACgAg -3'
miRNA:   3'- -ACACUGUGaUAGCAGGUaUGgCUGgU- -5'
5992 5' -50.7 NC_001806.1 + 95269 0.66 0.994911
Target:  5'- --aGGCGCUG-CGUCgCGUGCUGGCg- -3'
miRNA:   3'- acaCUGUGAUaGCAG-GUAUGGCUGgu -5'
5992 5' -50.7 NC_001806.1 + 102663 0.66 0.994911
Target:  5'- aGUGGCGCUGgcccaCAUacaGCCGGCCGc -3'
miRNA:   3'- aCACUGUGAUagcagGUA---UGGCUGGU- -5'
5992 5' -50.7 NC_001806.1 + 50229 0.66 0.994911
Target:  5'- --cGACugUcgCGUggccgcccgCUAUGCCGGCCGc -3'
miRNA:   3'- acaCUGugAuaGCA---------GGUAUGGCUGGU- -5'
5992 5' -50.7 NC_001806.1 + 118996 0.66 0.994088
Target:  5'- gUGUGACGCgcagggCGUCUAUGacCCGuacGCCGu -3'
miRNA:   3'- -ACACUGUGaua---GCAGGUAU--GGC---UGGU- -5'
5992 5' -50.7 NC_001806.1 + 69640 0.66 0.993063
Target:  5'- --aGACGCUGgcgCGUaucauggguccggCCGUGCCGACgGa -3'
miRNA:   3'- acaCUGUGAUa--GCA-------------GGUAUGGCUGgU- -5'
5992 5' -50.7 NC_001806.1 + 125088 0.66 0.992123
Target:  5'- --cGAUACUGUCGUCgGUGgCGcuGCCu -3'
miRNA:   3'- acaCUGUGAUAGCAGgUAUgGC--UGGu -5'
5992 5' -50.7 NC_001806.1 + 71223 0.66 0.992123
Target:  5'- cGUGuuucGCGCUuccgcguuUCGUCCGUuaGCCgGACCGg -3'
miRNA:   3'- aCAC----UGUGAu-------AGCAGGUA--UGG-CUGGU- -5'
5992 5' -50.7 NC_001806.1 + 20798 0.67 0.989534
Target:  5'- --gGACGCcccgAUCGUCCAcacggagcgcggcUGCCGACaCGg -3'
miRNA:   3'- acaCUGUGa---UAGCAGGU-------------AUGGCUG-GU- -5'
5992 5' -50.7 NC_001806.1 + 98706 0.67 0.984921
Target:  5'- cGUGGguCUGUUgGUCCugGCCGGCCu -3'
miRNA:   3'- aCACUguGAUAG-CAGGuaUGGCUGGu -5'
5992 5' -50.7 NC_001806.1 + 40175 0.68 0.983015
Target:  5'- cGUGGCGCgacUCG-CCcgGCCGugCu -3'
miRNA:   3'- aCACUGUGau-AGCaGGuaUGGCugGu -5'
5992 5' -50.7 NC_001806.1 + 70947 0.69 0.97067
Target:  5'- cGUGGCGCccUUGgucagCUcgGCCGACCAg -3'
miRNA:   3'- aCACUGUGauAGCa----GGuaUGGCUGGU- -5'
5992 5' -50.7 NC_001806.1 + 78602 0.69 0.967581
Target:  5'- ---aGCAC-GUCG-CCGUGCCGGCCGc -3'
miRNA:   3'- acacUGUGaUAGCaGGUAUGGCUGGU- -5'
5992 5' -50.7 NC_001806.1 + 108945 0.7 0.952928
Target:  5'- cGUGGCGCUGU-GU--GUACCGGCCu -3'
miRNA:   3'- aCACUGUGAUAgCAggUAUGGCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.