Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 5993 | 3' | -53.2 | NC_001806.1 | + | 44663 | 0.67 | 0.945465 |
|
Target: 5'- uCGCGCCGguaggGCCGUAguCAcGCUUGGGg -3' miRNA: 3'- -GCGUGGCag---CGGCAUauGU-CGAACUU- -5' |
|||||||
| 5993 | 3' | -53.2 | NC_001806.1 | + | 16583 | 0.67 | 0.945465 |
|
Target: 5'- gGCugCGUCGUCGUAUAcCGGgggGAGa -3' miRNA: 3'- gCGugGCAGCGGCAUAU-GUCgaaCUU- -5' |
|||||||
| 5993 | 3' | -53.2 | NC_001806.1 | + | 73341 | 0.67 | 0.935887 |
|
Target: 5'- aGCGCCuuacgGUCGCCGUAUcCGGCc---- -3' miRNA: 3'- gCGUGG-----CAGCGGCAUAuGUCGaacuu -5' |
|||||||
| 5993 | 3' | -53.2 | NC_001806.1 | + | 72038 | 0.68 | 0.913098 |
|
Target: 5'- uGCGCUGugucuucUCGCgCGUAUACGGCgaggUGGg -3' miRNA: 3'- gCGUGGC-------AGCG-GCAUAUGUCGa---ACUu -5' |
|||||||
| 5993 | 3' | -53.2 | NC_001806.1 | + | 24290 | 0.68 | 0.901105 |
|
Target: 5'- uGCGCCGUgCGCUGgccgGCGGCgcgGGAc -3' miRNA: 3'- gCGUGGCA-GCGGCaua-UGUCGaa-CUU- -5' |
|||||||
| 5993 | 3' | -53.2 | NC_001806.1 | + | 100378 | 0.7 | 0.849485 |
|
Target: 5'- aGCucCCGUCGCCGg--GCGGCgcgGGGg -3' miRNA: 3'- gCGu-GGCAGCGGCauaUGUCGaa-CUU- -5' |
|||||||
| 5993 | 3' | -53.2 | NC_001806.1 | + | 49522 | 0.7 | 0.823235 |
|
Target: 5'- gGCGCCGUCGCCGcUGUuccuagaggagcuGCAGUacGAGg -3' miRNA: 3'- gCGUGGCAGCGGC-AUA-------------UGUCGaaCUU- -5' |
|||||||
| 5993 | 3' | -53.2 | NC_001806.1 | + | 19069 | 0.76 | 0.491313 |
|
Target: 5'- gCGCACCGagCGCCGUAgcauugcauUugGGCUUGGGg -3' miRNA: 3'- -GCGUGGCa-GCGGCAU---------AugUCGAACUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home