miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5994 5' -56.8 NC_001806.1 + 100180 0.66 0.880227
Target:  5'- ---gGCuGGGUCCcgagaacagcaccccGGGauacugauGGGCGACGUGGg -3'
miRNA:   3'- aaaaCG-CCCAGG---------------UCU--------CCCGUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 101813 0.66 0.882339
Target:  5'- --gUGCGGGugcgguugaugaguUCCAGGGcGGUGAgGCGc -3'
miRNA:   3'- aaaACGCCC--------------AGGUCUC-CCGUUgCGCc -5'
5994 5' -56.8 NC_001806.1 + 119593 0.66 0.884431
Target:  5'- ---gGCGGGUCUGGAGcccccCGGCGgGGg -3'
miRNA:   3'- aaaaCGCCCAGGUCUCcc---GUUGCgCC- -5'
5994 5' -56.8 NC_001806.1 + 131026 0.66 0.884431
Target:  5'- ---cGCGGGUCCGuuagcGAGacGGaCcACGCGGu -3'
miRNA:   3'- aaaaCGCCCAGGU-----CUC--CC-GuUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 41163 0.66 0.884431
Target:  5'- --aUGCgucgGGGUCCAcGcGGGC--CGCGGg -3'
miRNA:   3'- aaaACG----CCCAGGU-CuCCCGuuGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 142170 0.66 0.869373
Target:  5'- --gUG-GGGUCCGacguggcgaugauGGGcGGCGGCGUGGu -3'
miRNA:   3'- aaaACgCCCAGGU-------------CUC-CCGUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 133140 0.66 0.862629
Target:  5'- ---cGC-GGUCUGcGGGGGCGAUGgGGg -3'
miRNA:   3'- aaaaCGcCCAGGU-CUCCCGUUGCgCC- -5'
5994 5' -56.8 NC_001806.1 + 127753 0.67 0.830682
Target:  5'- ---gGCGGGcugCCGGGugcGGGCcuGugGCGGc -3'
miRNA:   3'- aaaaCGCCCa--GGUCU---CCCG--UugCGCC- -5'
5994 5' -56.8 NC_001806.1 + 1508 0.67 0.838958
Target:  5'- ---cGuCGGGcUCCAGcAGGGCGcggGCGCa- -3'
miRNA:   3'- aaaaC-GCCC-AGGUC-UCCCGU---UGCGcc -5'
5994 5' -56.8 NC_001806.1 + 22916 0.67 0.838958
Target:  5'- ---cGCGG--CCGGAGGGaccCGCGGg -3'
miRNA:   3'- aaaaCGCCcaGGUCUCCCguuGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 6412 0.66 0.847046
Target:  5'- ---gGCGGaGg--AGGGGGgGACGCGGg -3'
miRNA:   3'- aaaaCGCC-CaggUCUCCCgUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 85962 0.66 0.847844
Target:  5'- -cUUGCGGGgcuuggacgcgccucCCGGGGGGUcggcaGGCGaCGGc -3'
miRNA:   3'- aaAACGCCCa--------------GGUCUCCCG-----UUGC-GCC- -5'
5994 5' -56.8 NC_001806.1 + 25406 0.66 0.850226
Target:  5'- ---gGCGGG---AGGGGGCGaggggcgguggugguGCGCGGg -3'
miRNA:   3'- aaaaCGCCCaggUCUCCCGU---------------UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 146067 0.66 0.850226
Target:  5'- ---gGCGGccagaggccaggucaGUCCGGGcGGGCAGgcgcuCGCGGa -3'
miRNA:   3'- aaaaCGCC---------------CAGGUCU-CCCGUU-----GCGCC- -5'
5994 5' -56.8 NC_001806.1 + 86073 0.66 0.853375
Target:  5'- ---gGCGGcGUCUagcucgcGGAGGGCGgccagccGCGCGa -3'
miRNA:   3'- aaaaCGCC-CAGG-------UCUCCCGU-------UGCGCc -5'
5994 5' -56.8 NC_001806.1 + 23951 0.66 0.854938
Target:  5'- --cUGgGGGggccgCCGGAGuGGUccgccgAGCGCGGc -3'
miRNA:   3'- aaaACgCCCa----GGUCUC-CCG------UUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 49582 0.66 0.854938
Target:  5'- ---cGuCGGG-CCGGAGGaCGGCgGCGGg -3'
miRNA:   3'- aaaaC-GCCCaGGUCUCCcGUUG-CGCC- -5'
5994 5' -56.8 NC_001806.1 + 103918 0.66 0.854938
Target:  5'- --cUGCGGGacgagCCGGGucacGcGGCuGACGCGGa -3'
miRNA:   3'- aaaACGCCCa----GGUCU----C-CCG-UUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 24877 0.66 0.862629
Target:  5'- ---gGCGGGggCCGuggaggugcuGGGGGCGGagGCGGg -3'
miRNA:   3'- aaaaCGCCCa-GGU----------CUCCCGUUg-CGCC- -5'
5994 5' -56.8 NC_001806.1 + 9765 0.66 0.862629
Target:  5'- ---cGUGGGUU--GGGGGCG-CGUGGg -3'
miRNA:   3'- aaaaCGCCCAGguCUCCCGUuGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.