miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5995 3' -53.6 NC_001806.1 + 37608 0.67 0.957062
Target:  5'- aCCGggGCCCAGggGCUAUUcgcGGCgGg -3'
miRNA:   3'- gGGC--UGGGUCuuUGAUGAuacCCGgC- -5'
5995 3' -53.6 NC_001806.1 + 130492 0.67 0.956683
Target:  5'- gCCGGCCCAGGccgccgaGACggaggagGUGGGUCu -3'
miRNA:   3'- gGGCUGGGUCU-------UUGauga---UACCCGGc -5'
5995 3' -53.6 NC_001806.1 + 69978 0.67 0.953163
Target:  5'- uUCUGGCCCugguggucGGGGACgcGCUGaGGGCCa -3'
miRNA:   3'- -GGGCUGGG--------UCUUUGa-UGAUaCCCGGc -5'
5995 3' -53.6 NC_001806.1 + 89477 0.67 0.953163
Target:  5'- gCCCGGgCCGGcAugUGCaa-GGGCCu -3'
miRNA:   3'- -GGGCUgGGUCuUugAUGauaCCCGGc -5'
5995 3' -53.6 NC_001806.1 + 113155 0.67 0.953163
Target:  5'- gCCUGGCCCAcGGGCggguccgAUGGGUCGc -3'
miRNA:   3'- -GGGCUGGGUcUUUGauga---UACCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 147614 0.67 0.953163
Target:  5'- gCCUGAgCCAGGGACgagugcgACUG-GGGCa- -3'
miRNA:   3'- -GGGCUgGGUCUUUGa------UGAUaCCCGgc -5'
5995 3' -53.6 NC_001806.1 + 65648 0.67 0.953163
Target:  5'- cCCCGGcggccuccCCCuGGguGGCUGCgcugGGGCCGc -3'
miRNA:   3'- -GGGCU--------GGGuCU--UUGAUGaua-CCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 72603 0.67 0.953163
Target:  5'- aCCGACCCGGGcccgucgcGACgACa--GGGCCu -3'
miRNA:   3'- gGGCUGGGUCU--------UUGaUGauaCCCGGc -5'
5995 3' -53.6 NC_001806.1 + 6812 0.67 0.949031
Target:  5'- -aCGACCCGGAGcguccccuGCUGCgcucucccGGGCUGc -3'
miRNA:   3'- ggGCUGGGUCUU--------UGAUGaua-----CCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 9607 0.67 0.949031
Target:  5'- gUCGGCCaCGcGAAugUAC-GUGGGCCc -3'
miRNA:   3'- gGGCUGG-GU-CUUugAUGaUACCCGGc -5'
5995 3' -53.6 NC_001806.1 + 36750 0.67 0.949031
Target:  5'- gCCCGGgCgGGAAGCUcCUAaGGGCa- -3'
miRNA:   3'- -GGGCUgGgUCUUUGAuGAUaCCCGgc -5'
5995 3' -53.6 NC_001806.1 + 59806 0.67 0.949031
Target:  5'- aCCGAUCgCGGGGucaaUugUAUGGaGCCGg -3'
miRNA:   3'- gGGCUGG-GUCUUug--AugAUACC-CGGC- -5'
5995 3' -53.6 NC_001806.1 + 25507 0.67 0.947746
Target:  5'- cCCCGagggagcgcgggacGCgCCGGGGAggGCUG-GGGCCGg -3'
miRNA:   3'- -GGGC--------------UG-GGUCUUUgaUGAUaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 71070 0.67 0.947746
Target:  5'- uCgCGACCUAGggGCcuggggggACUAcagccucggcccccUGGGCCa -3'
miRNA:   3'- -GgGCUGGGUCuuUGa-------UGAU--------------ACCCGGc -5'
5995 3' -53.6 NC_001806.1 + 38157 0.67 0.944665
Target:  5'- gCCgGGCCCcGAGGCgcgaccacacACUGUGGGgCGc -3'
miRNA:   3'- -GGgCUGGGuCUUUGa---------UGAUACCCgGC- -5'
5995 3' -53.6 NC_001806.1 + 96495 0.67 0.944665
Target:  5'- gCCgCGACCCAGGcGGCgaACgg-GGGCCc -3'
miRNA:   3'- -GG-GCUGGGUCU-UUGa-UGauaCCCGGc -5'
5995 3' -53.6 NC_001806.1 + 40417 0.67 0.944665
Target:  5'- aCCGACCCAGGAcCUcCgucaGGGUCu -3'
miRNA:   3'- gGGCUGGGUCUUuGAuGaua-CCCGGc -5'
5995 3' -53.6 NC_001806.1 + 71809 0.67 0.944665
Target:  5'- gCCCGACCUGGAGcCgggg--GGGUCGg -3'
miRNA:   3'- -GGGCUGGGUCUUuGaugauaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 33807 0.67 0.94006
Target:  5'- gCCGGCCggCGGGugGACUcGCgggGGGCCGg -3'
miRNA:   3'- gGGCUGG--GUCU--UUGA-UGauaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 24005 0.67 0.94006
Target:  5'- -gCGGCCCuGGccAACcgGCUGUgcGGGCCGg -3'
miRNA:   3'- ggGCUGGGuCU--UUGa-UGAUA--CCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.