miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 3' -53.7 NC_001806.1 + 62341 0.66 0.957983
Target:  5'- -gGUCACagcgCGCAGCUCaugCAGAcaAUGUUg -3'
miRNA:   3'- caUAGUGg---GCGUCGAGg--GUCU--UACAG- -5'
5996 3' -53.7 NC_001806.1 + 147041 0.66 0.945465
Target:  5'- ---cCGCCCGCggggacGGC-CCCGGAA-GUCu -3'
miRNA:   3'- cauaGUGGGCG------UCGaGGGUCUUaCAG- -5'
5996 3' -53.7 NC_001806.1 + 67128 0.66 0.945465
Target:  5'- cGUG-CACCCGCucucGGCUcgccccgacCCCAGGGcgGUCg -3'
miRNA:   3'- -CAUaGUGGGCG----UCGA---------GGGUCUUa-CAG- -5'
5996 3' -53.7 NC_001806.1 + 41887 0.66 0.945465
Target:  5'- cGUAUCGCCauccagGaCGGuCUCCCGGGG-GUCa -3'
miRNA:   3'- -CAUAGUGGg-----C-GUC-GAGGGUCUUaCAG- -5'
5996 3' -53.7 NC_001806.1 + 27145 0.66 0.945465
Target:  5'- -gGUCuuCCGCggAGCUCCCGGGAgcUCc -3'
miRNA:   3'- caUAGugGGCG--UCGAGGGUCUUacAG- -5'
5996 3' -53.7 NC_001806.1 + 133174 0.66 0.94501
Target:  5'- gGUGUCuuuaacguggACCCccaagacgcggauGCGGCUUCCGGggUGaUCg -3'
miRNA:   3'- -CAUAG----------UGGG-------------CGUCGAGGGUCuuAC-AG- -5'
5996 3' -53.7 NC_001806.1 + 43848 0.67 0.935887
Target:  5'- cGUGUC-CCCGCGuguccGUUCCCAGAc---- -3'
miRNA:   3'- -CAUAGuGGGCGU-----CGAGGGUCUuacag -5'
5996 3' -53.7 NC_001806.1 + 130146 0.68 0.900449
Target:  5'- -aGUgGCCCGCGcaguuCUCCCAGGucacaaaccugcuGUGUCg -3'
miRNA:   3'- caUAgUGGGCGUc----GAGGGUCU-------------UACAG- -5'
5996 3' -53.7 NC_001806.1 + 116316 0.68 0.894434
Target:  5'- -cAUCACCCgGguGCuUCCCAcgcGAAUcGUCg -3'
miRNA:   3'- caUAGUGGG-CguCG-AGGGU---CUUA-CAG- -5'
5996 3' -53.7 NC_001806.1 + 105346 0.69 0.841225
Target:  5'- -aAUCGCCCGcCGGCUgCCGGGAc--- -3'
miRNA:   3'- caUAGUGGGC-GUCGAgGGUCUUacag -5'
5996 3' -53.7 NC_001806.1 + 136782 0.72 0.70852
Target:  5'- ---cCGCCUGCAGCUgCCGGGugGUCg -3'
miRNA:   3'- cauaGUGGGCGUCGAgGGUCUuaCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.