Results 61 - 80 of 126 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 108933 | 0.68 | 0.655726 |
Target: 5'- -gGACGUacagGCCGUgGCGCUGUGuGUACc -3' miRNA: 3'- ggCUGCG----CGGCA-CGCGGCGCuCAUGc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 151162 | 0.68 | 0.655726 |
Target: 5'- -aGGCGCGCCagGUGCuCCGCGGugACGc -3' miRNA: 3'- ggCUGCGCGG--CACGcGGCGCUcaUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 98241 | 0.68 | 0.654752 |
Target: 5'- gCUGACGCgcgaugcgaucgaGCCGUGCaCCGUGGG-ACa -3' miRNA: 3'- -GGCUGCG-------------CGGCACGcGGCGCUCaUGc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 50749 | 0.68 | 0.645974 |
Target: 5'- aCCGugGUGgCGUGCgugacacugGCCGCGuuugACGg -3' miRNA: 3'- -GGCugCGCgGCACG---------CGGCGCuca-UGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 96621 | 0.68 | 0.645974 |
Target: 5'- gCCGgcgacaACGCGaCCGU-CGCCGCGGGccACGc -3' miRNA: 3'- -GGC------UGCGC-GGCAcGCGGCGCUCa-UGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 54367 | 0.68 | 0.665462 |
Target: 5'- gCCGAUGaCGCUGccGCGaCUGUGAuGUGCGg -3' miRNA: 3'- -GGCUGC-GCGGCa-CGC-GGCGCU-CAUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 57132 | 0.68 | 0.675172 |
Target: 5'- gCGuauaucCGCGCgGUGgGCCGCGcgaggggagggGGUGCGc -3' miRNA: 3'- gGCu-----GCGCGgCACgCGGCGC-----------UCAUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 122873 | 0.68 | 0.675172 |
Target: 5'- gCCGcCGCGCCacgGCcgagaagaGCgGCGAGUGCu -3' miRNA: 3'- -GGCuGCGCGGca-CG--------CGgCGCUCAUGc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 130478 | 0.68 | 0.694489 |
Target: 5'- cCCGAgGCGUCGcUGCcggcccagGCCGcCGAG-ACGg -3' miRNA: 3'- -GGCUgCGCGGC-ACG--------CGGC-GCUCaUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 115237 | 0.68 | 0.694489 |
Target: 5'- -gGACGCGCCGccggggGCGUuuaCGCGGGggACa -3' miRNA: 3'- ggCUGCGCGGCa-----CGCG---GCGCUCa-UGc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 76154 | 0.68 | 0.694489 |
Target: 5'- -gGGCGUGCCG-GCcCUGCGccAGUACGu -3' miRNA: 3'- ggCUGCGCGGCaCGcGGCGC--UCAUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 51025 | 0.68 | 0.694489 |
Target: 5'- gCGGCGgGuCCGUGUuggGcCCGCGGGUccGCGu -3' miRNA: 3'- gGCUGCgC-GGCACG---C-GGCGCUCA--UGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 146774 | 0.68 | 0.684851 |
Target: 5'- uCCGACGCGg---GgGCCGuCGGGUACu -3' miRNA: 3'- -GGCUGCGCggcaCgCGGC-GCUCAUGc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 119027 | 0.68 | 0.684851 |
Target: 5'- gCCGugGCGgCGcUGCGCCuugcGUGGGgcuCGg -3' miRNA: 3'- -GGCugCGCgGC-ACGCGG----CGCUCau-GC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 24507 | 0.68 | 0.684851 |
Target: 5'- aCCGcCGgGCCGUGCuGCCgGCGcuGG-ACGg -3' miRNA: 3'- -GGCuGCgCGGCACG-CGG-CGC--UCaUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 5361 | 0.68 | 0.684851 |
Target: 5'- aUCGGCGUcCCG-GCGCgGCGAGcgucugACGg -3' miRNA: 3'- -GGCUGCGcGGCaCGCGgCGCUCa-----UGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 30313 | 0.68 | 0.675172 |
Target: 5'- cCCGcggacGCGCGCCGUGUGCC-CcAGUcGCa -3' miRNA: 3'- -GGC-----UGCGCGGCACGCGGcGcUCA-UGc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 3487 | 0.68 | 0.675172 |
Target: 5'- cCCGGCGuCGUCGUcggcgucgGCGUgGCGGGcgGCGu -3' miRNA: 3'- -GGCUGC-GCGGCA--------CGCGgCGCUCa-UGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 133680 | 0.69 | 0.636212 |
Target: 5'- gCGGCGCGUCGUGCGugucugucCCG-GAG-GCGg -3' miRNA: 3'- gGCUGCGCGGCACGC--------GGCgCUCaUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 48788 | 0.69 | 0.636212 |
Target: 5'- gCCGGCGUG-UGUGUuaGCCGCGucUGCGg -3' miRNA: 3'- -GGCUGCGCgGCACG--CGGCGCucAUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home