miRNA display CGI


Results 81 - 100 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 86667 0.69 0.587492
Target:  5'- cCCGGCG-GCCGUGagGCCGCG-GcACa -3'
miRNA:   3'- -GGCUGCgCGGCACg-CGGCGCuCaUGc -5'
5996 5' -60.1 NC_001806.1 + 75724 0.69 0.587492
Target:  5'- gCCGACGUggagGCCGUGCuggaCCGCGuGgaaaGCGg -3'
miRNA:   3'- -GGCUGCG----CGGCACGc---GGCGCuCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 65233 0.69 0.587492
Target:  5'- aCCGcagaGCgGCGCCGUGUGUCGCGAc---- -3'
miRNA:   3'- -GGC----UG-CGCGGCACGCGGCGCUcaugc -5'
5996 5' -60.1 NC_001806.1 + 26967 0.69 0.586523
Target:  5'- cCUGGCGCGCCGcggcucgUGgGCCcGCGAGcggGCc -3'
miRNA:   3'- -GGCUGCGCGGC-------ACgCGG-CGCUCa--UGc -5'
5996 5' -60.1 NC_001806.1 + 36189 0.69 0.597202
Target:  5'- uUGACGCGUCGaUGCucuGCCGCGcGgGCGg -3'
miRNA:   3'- gGCUGCGCGGC-ACG---CGGCGCuCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 49203 0.69 0.597202
Target:  5'- aCCuGCGUGCgGUGUuCCGCGGGgaugACGa -3'
miRNA:   3'- -GGcUGCGCGgCACGcGGCGCUCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 135075 0.69 0.604987
Target:  5'- -gGACGCGCCGggccggaaaucgGCGCCGaccgggGAGggggGCGg -3'
miRNA:   3'- ggCUGCGCGGCa-----------CGCGGCg-----CUCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 21735 0.69 0.636212
Target:  5'- aCGACGCgGCCGaccaCGCaCGCGAGgcGCGg -3'
miRNA:   3'- gGCUGCG-CGGCac--GCG-GCGCUCa-UGC- -5'
5996 5' -60.1 NC_001806.1 + 133680 0.69 0.636212
Target:  5'- gCGGCGCGUCGUGCGugucugucCCG-GAG-GCGg -3'
miRNA:   3'- gGCUGCGCGGCACGC--------GGCgCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 48788 0.69 0.636212
Target:  5'- gCCGGCGUG-UGUGUuaGCCGCGucUGCGg -3'
miRNA:   3'- -GGCUGCGCgGCACG--CGGCGCucAUGC- -5'
5996 5' -60.1 NC_001806.1 + 95313 0.69 0.626447
Target:  5'- gCgGACGCGCCcaaggGCGgCGCGGGccccgACGa -3'
miRNA:   3'- -GgCUGCGCGGca---CGCgGCGCUCa----UGC- -5'
5996 5' -60.1 NC_001806.1 + 143108 0.69 0.625471
Target:  5'- cCCGACGCugggggcguggcuGCCGggagGgGCCGCGGauggGCGg -3'
miRNA:   3'- -GGCUGCG-------------CGGCa---CgCGGCGCUca--UGC- -5'
5996 5' -60.1 NC_001806.1 + 95658 0.69 0.616686
Target:  5'- gCGGCGCGCgCGcgcuucUGCGCCcugacgGCGGGcGCGg -3'
miRNA:   3'- gGCUGCGCG-GC------ACGCGG------CGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 24281 0.7 0.539498
Target:  5'- gCCGugcagUGCGCCGUGCGCuggccggcggCGCGGGaccUGCGc -3'
miRNA:   3'- -GGCu----GCGCGGCACGCG----------GCGCUC---AUGC- -5'
5996 5' -60.1 NC_001806.1 + 116149 0.7 0.549004
Target:  5'- cCCGAUGCGgCGgcgcugcaGCGCUGCGAaggGCGg -3'
miRNA:   3'- -GGCUGCGCgGCa-------CGCGGCGCUca-UGC- -5'
5996 5' -60.1 NC_001806.1 + 1780 0.7 0.567204
Target:  5'- aCCGGCGUGUccgggccgaagcgCGUGCGCaCGCGGuaGCGc -3'
miRNA:   3'- -GGCUGCGCG-------------GCACGCG-GCGCUcaUGC- -5'
5996 5' -60.1 NC_001806.1 + 93979 0.7 0.568166
Target:  5'- uCCGGC-CGCgGUacagaucgGCGCCGCGAG-AUGg -3'
miRNA:   3'- -GGCUGcGCGgCA--------CGCGGCGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 95003 0.7 0.568166
Target:  5'- cCUGAcCGCGCUGgcGCGgCGCGAGuUGCa -3'
miRNA:   3'- -GGCU-GCGCGGCa-CGCgGCGCUC-AUGc -5'
5996 5' -60.1 NC_001806.1 + 22182 0.7 0.568166
Target:  5'- cCCGGCG-GCCGUguggGCGCC-CGAGcuggGCGa -3'
miRNA:   3'- -GGCUGCgCGGCA----CGCGGcGCUCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 147495 0.7 0.539498
Target:  5'- -gGGCgGCGCCGgagggggcgGCGCCGCGGGaggGCc -3'
miRNA:   3'- ggCUG-CGCGGCa--------CGCGGCGCUCa--UGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.