Results 121 - 126 of 126 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 5996 | 5' | -60.1 | NC_001806.1 | + | 35558 | 0.75 | 0.308414 |
|
Target: 5'- cUCGGCGCGcCCG-GCGCCGCGccgaacgacGUGCGc -3' miRNA: 3'- -GGCUGCGC-GGCaCGCGGCGCu--------CAUGC- -5' |
|||||||
| 5996 | 5' | -60.1 | NC_001806.1 | + | 26803 | 0.76 | 0.275977 |
|
Target: 5'- cCUGGCGCGCC-UGCGCCuGCGAcGcGCGg -3' miRNA: 3'- -GGCUGCGCGGcACGCGG-CGCU-CaUGC- -5' |
|||||||
| 5996 | 5' | -60.1 | NC_001806.1 | + | 22766 | 0.76 | 0.275977 |
|
Target: 5'- aCGACGaCGCCGgGCGCCGCGcccAGgcCGg -3' miRNA: 3'- gGCUGC-GCGGCaCGCGGCGC---UCauGC- -5' |
|||||||
| 5996 | 5' | -60.1 | NC_001806.1 | + | 22640 | 0.76 | 0.269826 |
|
Target: 5'- gCGAgCGCGCgGUGC-CCGCcGGGUACGg -3' miRNA: 3'- gGCU-GCGCGgCACGcGGCG-CUCAUGC- -5' |
|||||||
| 5996 | 5' | -60.1 | NC_001806.1 | + | 22962 | 0.77 | 0.246325 |
|
Target: 5'- gCCGACGCGCCccgccUGCGCgcguggcugCGCGAGcUGCGg -3' miRNA: 3'- -GGCUGCGCGGc----ACGCG---------GCGCUC-AUGC- -5' |
|||||||
| 5996 | 5' | -60.1 | NC_001806.1 | + | 24404 | 0.82 | 0.119437 |
|
Target: 5'- cCCGACGCGCCGccgcugcgccUGUGCCGCGGcggcaacGUGCGc -3' miRNA: 3'- -GGCUGCGCGGC----------ACGCGGCGCU-------CAUGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home