miRNA display CGI


Results 41 - 60 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 95313 0.69 0.626447
Target:  5'- gCgGACGCGCCcaaggGCGgCGCGGGccccgACGa -3'
miRNA:   3'- -GgCUGCGCGGca---CGCgGCGCUCa----UGC- -5'
5996 5' -60.1 NC_001806.1 + 135075 0.69 0.604987
Target:  5'- -gGACGCGCCGggccggaaaucgGCGCCGaccgggGAGggggGCGg -3'
miRNA:   3'- ggCUGCGCGGCa-----------CGCGGCg-----CUCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 25922 0.69 0.597202
Target:  5'- gCGGCGUGCgCGcGCGCgGCGGGcguggggGCGg -3'
miRNA:   3'- gGCUGCGCG-GCaCGCGgCGCUCa------UGC- -5'
5996 5' -60.1 NC_001806.1 + 112519 0.69 0.587492
Target:  5'- gCCGACGUGCCgGUGaCGUacgGCGAG-AUGg -3'
miRNA:   3'- -GGCUGCGCGG-CAC-GCGg--CGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 75724 0.69 0.587492
Target:  5'- gCCGACGUggagGCCGUGCuggaCCGCGuGgaaaGCGg -3'
miRNA:   3'- -GGCUGCG----CGGCACGc---GGCGCuCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 86667 0.69 0.587492
Target:  5'- cCCGGCG-GCCGUGagGCCGCG-GcACa -3'
miRNA:   3'- -GGCUGCgCGGCACg-CGGCGCuCaUGc -5'
5996 5' -60.1 NC_001806.1 + 26967 0.69 0.586523
Target:  5'- cCUGGCGCGCCGcggcucgUGgGCCcGCGAGcggGCc -3'
miRNA:   3'- -GGCUGCGCGGC-------ACgCGG-CGCUCa--UGc -5'
5996 5' -60.1 NC_001806.1 + 65233 0.69 0.587492
Target:  5'- aCCGcagaGCgGCGCCGUGUGUCGCGAc---- -3'
miRNA:   3'- -GGC----UG-CGCGGCACGCGGCGCUcaugc -5'
5996 5' -60.1 NC_001806.1 + 51025 0.68 0.694489
Target:  5'- gCGGCGgGuCCGUGUuggGcCCGCGGGUccGCGu -3'
miRNA:   3'- gGCUGCgC-GGCACG---C-GGCGCUCA--UGC- -5'
5996 5' -60.1 NC_001806.1 + 146774 0.68 0.684851
Target:  5'- uCCGACGCGg---GgGCCGuCGGGUACu -3'
miRNA:   3'- -GGCUGCGCggcaCgCGGC-GCUCAUGc -5'
5996 5' -60.1 NC_001806.1 + 115237 0.68 0.694489
Target:  5'- -gGACGCGCCGccggggGCGUuuaCGCGGGggACa -3'
miRNA:   3'- ggCUGCGCGGCa-----CGCG---GCGCUCa-UGc -5'
5996 5' -60.1 NC_001806.1 + 130478 0.68 0.694489
Target:  5'- cCCGAgGCGUCGcUGCcggcccagGCCGcCGAG-ACGg -3'
miRNA:   3'- -GGCUgCGCGGC-ACG--------CGGC-GCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 96621 0.68 0.645974
Target:  5'- gCCGgcgacaACGCGaCCGU-CGCCGCGGGccACGc -3'
miRNA:   3'- -GGC------UGCGC-GGCAcGCGGCGCUCa-UGC- -5'
5996 5' -60.1 NC_001806.1 + 76154 0.68 0.694489
Target:  5'- -gGGCGUGCCG-GCcCUGCGccAGUACGu -3'
miRNA:   3'- ggCUGCGCGGCaCGcGGCGC--UCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 90248 0.68 0.655726
Target:  5'- uCCGACGuCGCCGUgGCGCCcCuGGU-CGu -3'
miRNA:   3'- -GGCUGC-GCGGCA-CGCGGcGcUCAuGC- -5'
5996 5' -60.1 NC_001806.1 + 24575 0.68 0.655726
Target:  5'- cCCGGCGCGCCGgacuuCUGCGAGg--- -3'
miRNA:   3'- -GGCUGCGCGGCacgc-GGCGCUCaugc -5'
5996 5' -60.1 NC_001806.1 + 50749 0.68 0.645974
Target:  5'- aCCGugGUGgCGUGCgugacacugGCCGCGuuugACGg -3'
miRNA:   3'- -GGCugCGCgGCACG---------CGGCGCuca-UGC- -5'
5996 5' -60.1 NC_001806.1 + 75310 0.68 0.655726
Target:  5'- gCGGCcaugGCCGacaGCGCCGCGGGaUACGu -3'
miRNA:   3'- gGCUGcg--CGGCa--CGCGGCGCUC-AUGC- -5'
5996 5' -60.1 NC_001806.1 + 44496 0.68 0.665462
Target:  5'- aCCGugGUGCCGUuuGCCGgGAcgGUGa- -3'
miRNA:   3'- -GGCugCGCGGCAcgCGGCgCU--CAUgc -5'
5996 5' -60.1 NC_001806.1 + 108933 0.68 0.655726
Target:  5'- -gGACGUacagGCCGUgGCGCUGUGuGUACc -3'
miRNA:   3'- ggCUGCG----CGGCA-CGCGGCGCuCAUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.