miRNA display CGI


Results 81 - 100 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 121846 0.67 0.741813
Target:  5'- cCCGACcaGCGCCGggugGCGCCuGUGuGUc-- -3'
miRNA:   3'- -GGCUG--CGCGGCa---CGCGG-CGCuCAugc -5'
5996 5' -60.1 NC_001806.1 + 4072 0.67 0.741813
Target:  5'- aCGGC-CGCCGggGCGCC-CGAGgccuCGa -3'
miRNA:   3'- gGCUGcGCGGCa-CGCGGcGCUCau--GC- -5'
5996 5' -60.1 NC_001806.1 + 21491 0.67 0.732491
Target:  5'- gCCGACGcCGCCGgcgaccggGCcccggcccgggGCCGCGA--ACGg -3'
miRNA:   3'- -GGCUGC-GCGGCa-------CG-----------CGGCGCUcaUGC- -5'
5996 5' -60.1 NC_001806.1 + 140688 0.67 0.732491
Target:  5'- gCGGCGC-CCGcGUGCCGCGcuGGaACGc -3'
miRNA:   3'- gGCUGCGcGGCaCGCGGCGC--UCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 75499 0.67 0.713617
Target:  5'- aCCGGCGCGCgGgaaaGCcUCGCGGGccACGa -3'
miRNA:   3'- -GGCUGCGCGgCa---CGcGGCGCUCa-UGC- -5'
5996 5' -60.1 NC_001806.1 + 42231 0.67 0.70408
Target:  5'- cCCGGC-CGCCGcgGCcCCGCGGgcGUACu -3'
miRNA:   3'- -GGCUGcGCGGCa-CGcGGCGCU--CAUGc -5'
5996 5' -60.1 NC_001806.1 + 4693 0.67 0.70408
Target:  5'- uCCGugGgGuCCGgauacGCGCCGCGua-GCGg -3'
miRNA:   3'- -GGCugCgC-GGCa----CGCGGCGCucaUGC- -5'
5996 5' -60.1 NC_001806.1 + 68601 0.67 0.70408
Target:  5'- gCCGGucCGCGUCcgccaGUGCGCCGUgGAGUGg- -3'
miRNA:   3'- -GGCU--GCGCGG-----CACGCGGCG-CUCAUgc -5'
5996 5' -60.1 NC_001806.1 + 144369 0.67 0.713617
Target:  5'- -gGGCGCG-CGUGC-CCGCGAGa--- -3'
miRNA:   3'- ggCUGCGCgGCACGcGGCGCUCaugc -5'
5996 5' -60.1 NC_001806.1 + 24071 0.67 0.741813
Target:  5'- cCCGACGUGUCG-GCGCUggGCGcacAGgGCGu -3'
miRNA:   3'- -GGCUGCGCGGCaCGCGG--CGC---UCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 40559 0.67 0.70408
Target:  5'- -gGGCGgGgCGUgaaaauggaaGCGCCGCGGGUcgGCGu -3'
miRNA:   3'- ggCUGCgCgGCA----------CGCGGCGCUCA--UGC- -5'
5996 5' -60.1 NC_001806.1 + 79547 0.67 0.713617
Target:  5'- gCCGGCGC-CCGUGgGCCcccGCGAcgACu -3'
miRNA:   3'- -GGCUGCGcGGCACgCGG---CGCUcaUGc -5'
5996 5' -60.1 NC_001806.1 + 138773 0.67 0.729678
Target:  5'- gCCGACGCaggcgucgguaaugGCCGacgcagGCGCCcccgGCGAgcGUGCGu -3'
miRNA:   3'- -GGCUGCG--------------CGGCa-----CGCGG----CGCU--CAUGC- -5'
5996 5' -60.1 NC_001806.1 + 49277 0.67 0.723089
Target:  5'- cCCG-UGCGCCGUcgacgggaagGC-CCGCGAGcccgACGa -3'
miRNA:   3'- -GGCuGCGCGGCA----------CGcGGCGCUCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 49519 0.67 0.723089
Target:  5'- -gGugGCGCCGU-CGCCGCuguuccuagagGAGcUGCa -3'
miRNA:   3'- ggCugCGCGGCAcGCGGCG-----------CUC-AUGc -5'
5996 5' -60.1 NC_001806.1 + 1616 0.67 0.723089
Target:  5'- gCGGCGCGCCcaggccccagcGcGCGCagGCGGcGUGCGa -3'
miRNA:   3'- gGCUGCGCGG-----------CaCGCGg-CGCU-CAUGC- -5'
5996 5' -60.1 NC_001806.1 + 86305 0.66 0.760189
Target:  5'- gUGAUGCGCCGauggGCGUCuaCGAGgACGg -3'
miRNA:   3'- gGCUGCGCGGCa---CGCGGc-GCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 102832 0.66 0.760189
Target:  5'- cCCGACGaGCCGgucGCcCCGCGGcccgcGUACa -3'
miRNA:   3'- -GGCUGCgCGGCa--CGcGGCGCU-----CAUGc -5'
5996 5' -60.1 NC_001806.1 + 151534 0.66 0.778151
Target:  5'- aCGGCGC-CCGUGgGCC-CGGGcgGCc -3'
miRNA:   3'- gGCUGCGcGGCACgCGGcGCUCa-UGc -5'
5996 5' -60.1 NC_001806.1 + 2504 0.66 0.786958
Target:  5'- gCCGcACGCgGCC-UGgGCgGCGGGgGCGg -3'
miRNA:   3'- -GGC-UGCG-CGGcACgCGgCGCUCaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.