Results 121 - 126 of 126 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 5996 | 5' | -60.1 | NC_001806.1 | + | 63802 | 0.66 | 0.774595 |
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Target: 5'- uCgGACGCGCgcucucuuuguUGUGCGCCgccaccaGCGAGUcaaggaccuugaggGCGg -3' miRNA: 3'- -GgCUGCGCG-----------GCACGCGG-------CGCUCA--------------UGC- -5' |
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| 5996 | 5' | -60.1 | NC_001806.1 | + | 76270 | 0.66 | 0.775486 |
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Target: 5'- gCGugGCGCUGgaccugGCcgccGCCGCGgaggagauauccgcGGUGCGc -3' miRNA: 3'- gGCugCGCGGCa-----CG----CGGCGC--------------UCAUGC- -5' |
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| 5996 | 5' | -60.1 | NC_001806.1 | + | 24224 | 0.66 | 0.778151 |
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Target: 5'- gCCGACGgGCCcgcgGUGUCGCGGcaGCa -3' miRNA: 3'- -GGCUGCgCGGca--CGCGGCGCUcaUGc -5' |
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| 5996 | 5' | -60.1 | NC_001806.1 | + | 42006 | 0.66 | 0.778151 |
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Target: 5'- -gGGCuGCuCCGUGCugGCCGCgGGGUugGg -3' miRNA: 3'- ggCUG-CGcGGCACG--CGGCG-CUCAugC- -5' |
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| 5996 | 5' | -60.1 | NC_001806.1 | + | 50658 | 0.66 | 0.778151 |
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Target: 5'- -gGACGCGCaccgGCGCCGgGAcgACGc -3' miRNA: 3'- ggCUGCGCGgca-CGCGGCgCUcaUGC- -5' |
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| 5996 | 5' | -60.1 | NC_001806.1 | + | 23712 | 0.66 | 0.804183 |
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Target: 5'- aUCGcCGCGCgGUGCGCCGgGcccGCc -3' miRNA: 3'- -GGCuGCGCGgCACGCGGCgCucaUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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