miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 49203 0.69 0.597202
Target:  5'- aCCuGCGUGCgGUGUuCCGCGGGgaugACGa -3'
miRNA:   3'- -GGcUGCGCGgCACGcGGCGCUCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 135075 0.69 0.604987
Target:  5'- -gGACGCGCCGggccggaaaucgGCGCCGaccgggGAGggggGCGg -3'
miRNA:   3'- ggCUGCGCGGCa-----------CGCGGCg-----CUCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 95658 0.69 0.616686
Target:  5'- gCGGCGCGCgCGcgcuucUGCGCCcugacgGCGGGcGCGg -3'
miRNA:   3'- gGCUGCGCG-GC------ACGCGG------CGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 143108 0.69 0.625471
Target:  5'- cCCGACGCugggggcguggcuGCCGggagGgGCCGCGGauggGCGg -3'
miRNA:   3'- -GGCUGCG-------------CGGCa---CgCGGCGCUca--UGC- -5'
5996 5' -60.1 NC_001806.1 + 95313 0.69 0.626447
Target:  5'- gCgGACGCGCCcaaggGCGgCGCGGGccccgACGa -3'
miRNA:   3'- -GgCUGCGCGGca---CGCgGCGCUCa----UGC- -5'
5996 5' -60.1 NC_001806.1 + 48788 0.69 0.636212
Target:  5'- gCCGGCGUG-UGUGUuaGCCGCGucUGCGg -3'
miRNA:   3'- -GGCUGCGCgGCACG--CGGCGCucAUGC- -5'
5996 5' -60.1 NC_001806.1 + 21735 0.69 0.636212
Target:  5'- aCGACGCgGCCGaccaCGCaCGCGAGgcGCGg -3'
miRNA:   3'- gGCUGCG-CGGCac--GCG-GCGCUCa-UGC- -5'
5996 5' -60.1 NC_001806.1 + 133680 0.69 0.636212
Target:  5'- gCGGCGCGUCGUGCGugucugucCCG-GAG-GCGg -3'
miRNA:   3'- gGCUGCGCGGCACGC--------GGCgCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 96621 0.68 0.645974
Target:  5'- gCCGgcgacaACGCGaCCGU-CGCCGCGGGccACGc -3'
miRNA:   3'- -GGC------UGCGC-GGCAcGCGGCGCUCa-UGC- -5'
5996 5' -60.1 NC_001806.1 + 50749 0.68 0.645974
Target:  5'- aCCGugGUGgCGUGCgugacacugGCCGCGuuugACGg -3'
miRNA:   3'- -GGCugCGCgGCACG---------CGGCGCuca-UGC- -5'
5996 5' -60.1 NC_001806.1 + 98241 0.68 0.654752
Target:  5'- gCUGACGCgcgaugcgaucgaGCCGUGCaCCGUGGG-ACa -3'
miRNA:   3'- -GGCUGCG-------------CGGCACGcGGCGCUCaUGc -5'
5996 5' -60.1 NC_001806.1 + 90248 0.68 0.655726
Target:  5'- uCCGACGuCGCCGUgGCGCCcCuGGU-CGu -3'
miRNA:   3'- -GGCUGC-GCGGCA-CGCGGcGcUCAuGC- -5'
5996 5' -60.1 NC_001806.1 + 75310 0.68 0.655726
Target:  5'- gCGGCcaugGCCGacaGCGCCGCGGGaUACGu -3'
miRNA:   3'- gGCUGcg--CGGCa--CGCGGCGCUC-AUGC- -5'
5996 5' -60.1 NC_001806.1 + 24575 0.68 0.655726
Target:  5'- cCCGGCGCGCCGgacuuCUGCGAGg--- -3'
miRNA:   3'- -GGCUGCGCGGCacgc-GGCGCUCaugc -5'
5996 5' -60.1 NC_001806.1 + 108933 0.68 0.655726
Target:  5'- -gGACGUacagGCCGUgGCGCUGUGuGUACc -3'
miRNA:   3'- ggCUGCG----CGGCA-CGCGGCGCuCAUGc -5'
5996 5' -60.1 NC_001806.1 + 151162 0.68 0.655726
Target:  5'- -aGGCGCGCCagGUGCuCCGCGGugACGc -3'
miRNA:   3'- ggCUGCGCGG--CACGcGGCGCUcaUGC- -5'
5996 5' -60.1 NC_001806.1 + 44496 0.68 0.665462
Target:  5'- aCCGugGUGCCGUuuGCCGgGAcgGUGa- -3'
miRNA:   3'- -GGCugCGCGGCAcgCGGCgCU--CAUgc -5'
5996 5' -60.1 NC_001806.1 + 9857 0.68 0.665462
Target:  5'- aCCG-CGUuCCGguacUGCGCCGCG-GUGCu -3'
miRNA:   3'- -GGCuGCGcGGC----ACGCGGCGCuCAUGc -5'
5996 5' -60.1 NC_001806.1 + 54367 0.68 0.665462
Target:  5'- gCCGAUGaCGCUGccGCGaCUGUGAuGUGCGg -3'
miRNA:   3'- -GGCUGC-GCGGCa-CGC-GGCGCU-CAUGC- -5'
5996 5' -60.1 NC_001806.1 + 122873 0.68 0.675172
Target:  5'- gCCGcCGCGCCacgGCcgagaagaGCgGCGAGUGCu -3'
miRNA:   3'- -GGCuGCGCGGca-CG--------CGgCGCUCAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.