Results 61 - 80 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 57132 | 0.68 | 0.675172 |
Target: 5'- gCGuauaucCGCGCgGUGgGCCGCGcgaggggagggGGUGCGc -3' miRNA: 3'- gGCu-----GCGCGgCACgCGGCGC-----------UCAUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 122873 | 0.68 | 0.675172 |
Target: 5'- gCCGcCGCGCCacgGCcgagaagaGCgGCGAGUGCu -3' miRNA: 3'- -GGCuGCGCGGca-CG--------CGgCGCUCAUGc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 3487 | 0.68 | 0.675172 |
Target: 5'- cCCGGCGuCGUCGUcggcgucgGCGUgGCGGGcgGCGu -3' miRNA: 3'- -GGCUGC-GCGGCA--------CGCGgCGCUCa-UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 119027 | 0.68 | 0.684851 |
Target: 5'- gCCGugGCGgCGcUGCGCCuugcGUGGGgcuCGg -3' miRNA: 3'- -GGCugCGCgGC-ACGCGG----CGCUCau-GC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 5361 | 0.68 | 0.684851 |
Target: 5'- aUCGGCGUcCCG-GCGCgGCGAGcgucugACGg -3' miRNA: 3'- -GGCUGCGcGGCaCGCGgCGCUCa-----UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 24507 | 0.68 | 0.684851 |
Target: 5'- aCCGcCGgGCCGUGCuGCCgGCGcuGG-ACGg -3' miRNA: 3'- -GGCuGCgCGGCACG-CGG-CGC--UCaUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 146774 | 0.68 | 0.684851 |
Target: 5'- uCCGACGCGg---GgGCCGuCGGGUACu -3' miRNA: 3'- -GGCUGCGCggcaCgCGGC-GCUCAUGc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 115237 | 0.68 | 0.694489 |
Target: 5'- -gGACGCGCCGccggggGCGUuuaCGCGGGggACa -3' miRNA: 3'- ggCUGCGCGGCa-----CGCG---GCGCUCa-UGc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 51025 | 0.68 | 0.694489 |
Target: 5'- gCGGCGgGuCCGUGUuggGcCCGCGGGUccGCGu -3' miRNA: 3'- gGCUGCgC-GGCACG---C-GGCGCUCA--UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 130478 | 0.68 | 0.694489 |
Target: 5'- cCCGAgGCGUCGcUGCcggcccagGCCGcCGAG-ACGg -3' miRNA: 3'- -GGCUgCGCGGC-ACG--------CGGC-GCUCaUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 76154 | 0.68 | 0.694489 |
Target: 5'- -gGGCGUGCCG-GCcCUGCGccAGUACGu -3' miRNA: 3'- ggCUGCGCGGCaCGcGGCGC--UCAUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 42231 | 0.67 | 0.70408 |
Target: 5'- cCCGGC-CGCCGcgGCcCCGCGGgcGUACu -3' miRNA: 3'- -GGCUGcGCGGCa-CGcGGCGCU--CAUGc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 4693 | 0.67 | 0.70408 |
Target: 5'- uCCGugGgGuCCGgauacGCGCCGCGua-GCGg -3' miRNA: 3'- -GGCugCgC-GGCa----CGCGGCGCucaUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 40559 | 0.67 | 0.70408 |
Target: 5'- -gGGCGgGgCGUgaaaauggaaGCGCCGCGGGUcgGCGu -3' miRNA: 3'- ggCUGCgCgGCA----------CGCGGCGCUCA--UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 68601 | 0.67 | 0.70408 |
Target: 5'- gCCGGucCGCGUCcgccaGUGCGCCGUgGAGUGg- -3' miRNA: 3'- -GGCU--GCGCGG-----CACGCGGCG-CUCAUgc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 4445 | 0.67 | 0.712666 |
Target: 5'- gCGGCGUccgcccgggggcuGCCG-GCGCCGCGcucgACGg -3' miRNA: 3'- gGCUGCG-------------CGGCaCGCGGCGCuca-UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 79547 | 0.67 | 0.713617 |
Target: 5'- gCCGGCGC-CCGUGgGCCcccGCGAcgACu -3' miRNA: 3'- -GGCUGCGcGGCACgCGG---CGCUcaUGc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 144369 | 0.67 | 0.713617 |
Target: 5'- -gGGCGCG-CGUGC-CCGCGAGa--- -3' miRNA: 3'- ggCUGCGCgGCACGcGGCGCUCaugc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 75499 | 0.67 | 0.713617 |
Target: 5'- aCCGGCGCGCgGgaaaGCcUCGCGGGccACGa -3' miRNA: 3'- -GGCUGCGCGgCa---CGcGGCGCUCa-UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 1616 | 0.67 | 0.723089 |
Target: 5'- gCGGCGCGCCcaggccccagcGcGCGCagGCGGcGUGCGa -3' miRNA: 3'- gGCUGCGCGG-----------CaCGCGg-CGCU-CAUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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