Results 81 - 100 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 48788 | 0.69 | 0.636212 |
Target: 5'- gCCGGCGUG-UGUGUuaGCCGCGucUGCGg -3' miRNA: 3'- -GGCUGCGCgGCACG--CGGCGCucAUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 95313 | 0.69 | 0.626447 |
Target: 5'- gCgGACGCGCCcaaggGCGgCGCGGGccccgACGa -3' miRNA: 3'- -GgCUGCGCGGca---CGCgGCGCUCa----UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 143108 | 0.69 | 0.625471 |
Target: 5'- cCCGACGCugggggcguggcuGCCGggagGgGCCGCGGauggGCGg -3' miRNA: 3'- -GGCUGCG-------------CGGCa---CgCGGCGCUca--UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 95658 | 0.69 | 0.616686 |
Target: 5'- gCGGCGCGCgCGcgcuucUGCGCCcugacgGCGGGcGCGg -3' miRNA: 3'- gGCUGCGCG-GC------ACGCGG------CGCUCaUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 135075 | 0.69 | 0.604987 |
Target: 5'- -gGACGCGCCGggccggaaaucgGCGCCGaccgggGAGggggGCGg -3' miRNA: 3'- ggCUGCGCGGCa-----------CGCGGCg-----CUCa---UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 49203 | 0.69 | 0.597202 |
Target: 5'- aCCuGCGUGCgGUGUuCCGCGGGgaugACGa -3' miRNA: 3'- -GGcUGCGCGgCACGcGGCGCUCa---UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 36189 | 0.69 | 0.597202 |
Target: 5'- uUGACGCGUCGaUGCucuGCCGCGcGgGCGg -3' miRNA: 3'- gGCUGCGCGGC-ACG---CGGCGCuCaUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 25922 | 0.69 | 0.597202 |
Target: 5'- gCGGCGUGCgCGcGCGCgGCGGGcguggggGCGg -3' miRNA: 3'- gGCUGCGCG-GCaCGCGgCGCUCa------UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 65233 | 0.69 | 0.587492 |
Target: 5'- aCCGcagaGCgGCGCCGUGUGUCGCGAc---- -3' miRNA: 3'- -GGC----UG-CGCGGCACGCGGCGCUcaugc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 75724 | 0.69 | 0.587492 |
Target: 5'- gCCGACGUggagGCCGUGCuggaCCGCGuGgaaaGCGg -3' miRNA: 3'- -GGCUGCG----CGGCACGc---GGCGCuCa---UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 86667 | 0.69 | 0.587492 |
Target: 5'- cCCGGCG-GCCGUGagGCCGCG-GcACa -3' miRNA: 3'- -GGCUGCgCGGCACg-CGGCGCuCaUGc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 112519 | 0.69 | 0.587492 |
Target: 5'- gCCGACGUGCCgGUGaCGUacgGCGAG-AUGg -3' miRNA: 3'- -GGCUGCGCGG-CAC-GCGg--CGCUCaUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 26967 | 0.69 | 0.586523 |
Target: 5'- cCUGGCGCGCCGcggcucgUGgGCCcGCGAGcggGCc -3' miRNA: 3'- -GGCUGCGCGGC-------ACgCGG-CGCUCa--UGc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 125836 | 0.7 | 0.577812 |
Target: 5'- cCUGACGCGCCGcgggcccccgGcCGCCGCGG--ACGc -3' miRNA: 3'- -GGCUGCGCGGCa---------C-GCGGCGCUcaUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 93979 | 0.7 | 0.568166 |
Target: 5'- uCCGGC-CGCgGUacagaucgGCGCCGCGAG-AUGg -3' miRNA: 3'- -GGCUGcGCGgCA--------CGCGGCGCUCaUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 95003 | 0.7 | 0.568166 |
Target: 5'- cCUGAcCGCGCUGgcGCGgCGCGAGuUGCa -3' miRNA: 3'- -GGCU-GCGCGGCa-CGCgGCGCUC-AUGc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 22182 | 0.7 | 0.568166 |
Target: 5'- cCCGGCG-GCCGUguggGCGCC-CGAGcuggGCGa -3' miRNA: 3'- -GGCUGCgCGGCA----CGCGGcGCUCa---UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 1780 | 0.7 | 0.567204 |
Target: 5'- aCCGGCGUGUccgggccgaagcgCGUGCGCaCGCGGuaGCGc -3' miRNA: 3'- -GGCUGCGCG-------------GCACGCG-GCGCUcaUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 116149 | 0.7 | 0.549004 |
Target: 5'- cCCGAUGCGgCGgcgcugcaGCGCUGCGAaggGCGg -3' miRNA: 3'- -GGCUGCGCgGCa-------CGCGGCGCUca-UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 147495 | 0.7 | 0.539498 |
Target: 5'- -gGGCgGCGCCGgagggggcgGCGCCGCGGGaggGCc -3' miRNA: 3'- ggCUG-CGCGGCa--------CGCGGCGCUCa--UGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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