miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 24640 0.72 0.448246
Target:  5'- -gGGCGCGCCGcUGCgGCC-CGuGUACGu -3'
miRNA:   3'- ggCUGCGCGGC-ACG-CGGcGCuCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 25823 0.72 0.465849
Target:  5'- gUGACGUGCggaGUGCGCCGUGcucuGUugGu -3'
miRNA:   3'- gGCUGCGCGg--CACGCGGCGCu---CAugC- -5'
5996 5' -60.1 NC_001806.1 + 25922 0.69 0.597202
Target:  5'- gCGGCGUGCgCGcGCGCgGCGGGcguggggGCGg -3'
miRNA:   3'- gGCUGCGCG-GCaCGCGgCGCUCa------UGC- -5'
5996 5' -60.1 NC_001806.1 + 26803 0.76 0.275977
Target:  5'- cCUGGCGCGCC-UGCGCCuGCGAcGcGCGg -3'
miRNA:   3'- -GGCUGCGCGGcACGCGG-CGCU-CaUGC- -5'
5996 5' -60.1 NC_001806.1 + 26967 0.69 0.586523
Target:  5'- cCUGGCGCGCCGcggcucgUGgGCCcGCGAGcggGCc -3'
miRNA:   3'- -GGCUGCGCGGC-------ACgCGG-CGCUCa--UGc -5'
5996 5' -60.1 NC_001806.1 + 27278 0.66 0.786958
Target:  5'- aUCGGCG-GCCGccaGCGCgGCGGGgccCGg -3'
miRNA:   3'- -GGCUGCgCGGCa--CGCGgCGCUCau-GC- -5'
5996 5' -60.1 NC_001806.1 + 29948 0.72 0.439584
Target:  5'- cCCGccaguCGCgaGCCGcgGCGCCGCGGGggGCGu -3'
miRNA:   3'- -GGCu----GCG--CGGCa-CGCGGCGCUCa-UGC- -5'
5996 5' -60.1 NC_001806.1 + 30232 0.7 0.539498
Target:  5'- gCCGugGCcCCGUGCG-UGCGAGcGCc -3'
miRNA:   3'- -GGCugCGcGGCACGCgGCGCUCaUGc -5'
5996 5' -60.1 NC_001806.1 + 30313 0.68 0.675172
Target:  5'- cCCGcggacGCGCGCCGUGUGCC-CcAGUcGCa -3'
miRNA:   3'- -GGC-----UGCGCGGCACGCGGcGcUCA-UGc -5'
5996 5' -60.1 NC_001806.1 + 34318 0.72 0.465849
Target:  5'- gCGGCGCGCCGgacgggGCGCUG-GAGauaACGg -3'
miRNA:   3'- gGCUGCGCGGCa-----CGCGGCgCUCa--UGC- -5'
5996 5' -60.1 NC_001806.1 + 35558 0.75 0.308414
Target:  5'- cUCGGCGCGcCCG-GCGCCGCGccgaacgacGUGCGc -3'
miRNA:   3'- -GGCUGCGC-GGCaCGCGGCGCu--------CAUGC- -5'
5996 5' -60.1 NC_001806.1 + 36189 0.69 0.597202
Target:  5'- uUGACGCGUCGaUGCucuGCCGCGcGgGCGg -3'
miRNA:   3'- gGCUGCGCGGC-ACG---CGGCGCuCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 40042 0.67 0.741813
Target:  5'- aUGGCGUGCCG-GCGUCaaugguaaacaGCGuGUGCa -3'
miRNA:   3'- gGCUGCGCGGCaCGCGG-----------CGCuCAUGc -5'
5996 5' -60.1 NC_001806.1 + 40559 0.67 0.70408
Target:  5'- -gGGCGgGgCGUgaaaauggaaGCGCCGCGGGUcgGCGu -3'
miRNA:   3'- ggCUGCgCgGCA----------CGCGGCGCUCA--UGC- -5'
5996 5' -60.1 NC_001806.1 + 41426 0.73 0.39776
Target:  5'- cCCaGCGCGCCGUG-GUCG-GGGUGCGc -3'
miRNA:   3'- -GGcUGCGCGGCACgCGGCgCUCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 42006 0.66 0.778151
Target:  5'- -gGGCuGCuCCGUGCugGCCGCgGGGUugGg -3'
miRNA:   3'- ggCUG-CGcGGCACG--CGGCG-CUCAugC- -5'
5996 5' -60.1 NC_001806.1 + 42231 0.67 0.70408
Target:  5'- cCCGGC-CGCCGcgGCcCCGCGGgcGUACu -3'
miRNA:   3'- -GGCUGcGCGGCa-CGcGGCGCU--CAUGc -5'
5996 5' -60.1 NC_001806.1 + 42612 0.73 0.387312
Target:  5'- -gGACGCGCCcugaucauacUGCGCCGCGgcggcgucgcguccGGUGCGg -3'
miRNA:   3'- ggCUGCGCGGc---------ACGCGGCGC--------------UCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 44496 0.68 0.665462
Target:  5'- aCCGugGUGCCGUuuGCCGgGAcgGUGa- -3'
miRNA:   3'- -GGCugCGCGGCAcgCGGCgCU--CAUgc -5'
5996 5' -60.1 NC_001806.1 + 48788 0.69 0.636212
Target:  5'- gCCGGCGUG-UGUGUuaGCCGCGucUGCGg -3'
miRNA:   3'- -GGCUGCGCgGCACG--CGGCGCucAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.