Results 121 - 126 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 147987 | 0.66 | 0.778151 |
Target: 5'- gCCaGACGCcccCCGcgGCGCCGCGGcucGCGa -3' miRNA: 3'- -GG-CUGCGc--GGCa-CGCGGCGCUca-UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 148083 | 0.66 | 0.786958 |
Target: 5'- cCCGAUggGCGCCGagggggGCGCUGUccGAGccGCGg -3' miRNA: 3'- -GGCUG--CGCGGCa-----CGCGGCG--CUCa-UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 151162 | 0.68 | 0.655726 |
Target: 5'- -aGGCGCGCCagGUGCuCCGCGGugACGc -3' miRNA: 3'- ggCUGCGCGG--CACGcGGCGCUcaUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 151440 | 0.66 | 0.795638 |
Target: 5'- aCCGGCgggggGCGgCGgcgggGCgGCCGCGGGcGCGc -3' miRNA: 3'- -GGCUG-----CGCgGCa----CG-CGGCGCUCaUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 151534 | 0.66 | 0.778151 |
Target: 5'- aCGGCGC-CCGUGgGCC-CGGGcgGCc -3' miRNA: 3'- gGCUGCGcGGCACgCGGcGCUCa-UGc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 152066 | 0.66 | 0.795638 |
Target: 5'- cCCGccuuuuuuGCGCGCgCGcGCGCCcGCGGGggGCc -3' miRNA: 3'- -GGC--------UGCGCG-GCaCGCGG-CGCUCa-UGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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