miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 95313 0.69 0.626447
Target:  5'- gCgGACGCGCCcaaggGCGgCGCGGGccccgACGa -3'
miRNA:   3'- -GgCUGCGCGGca---CGCgGCGCUCa----UGC- -5'
5996 5' -60.1 NC_001806.1 + 95003 0.7 0.568166
Target:  5'- cCUGAcCGCGCUGgcGCGgCGCGAGuUGCa -3'
miRNA:   3'- -GGCU-GCGCGGCa-CGCgGCGCUC-AUGc -5'
5996 5' -60.1 NC_001806.1 + 93979 0.7 0.568166
Target:  5'- uCCGGC-CGCgGUacagaucgGCGCCGCGAG-AUGg -3'
miRNA:   3'- -GGCUGcGCGgCA--------CGCGGCGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 90248 0.68 0.655726
Target:  5'- uCCGACGuCGCCGUgGCGCCcCuGGU-CGu -3'
miRNA:   3'- -GGCUGC-GCGGCA-CGCGGcGcUCAuGC- -5'
5996 5' -60.1 NC_001806.1 + 86667 0.69 0.587492
Target:  5'- cCCGGCG-GCCGUGagGCCGCG-GcACa -3'
miRNA:   3'- -GGCUGCgCGGCACg-CGGCGCuCaUGc -5'
5996 5' -60.1 NC_001806.1 + 86305 0.66 0.760189
Target:  5'- gUGAUGCGCCGauggGCGUCuaCGAGgACGg -3'
miRNA:   3'- gGCUGCGCGGCa---CGCGGc-GCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 79547 0.67 0.713617
Target:  5'- gCCGGCGC-CCGUGgGCCcccGCGAcgACu -3'
miRNA:   3'- -GGCUGCGcGGCACgCGG---CGCUcaUGc -5'
5996 5' -60.1 NC_001806.1 + 77660 0.66 0.786958
Target:  5'- cUCGGCGCGCUGcugaUGUGUCcCGAG-GCGg -3'
miRNA:   3'- -GGCUGCGCGGC----ACGCGGcGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 76270 0.66 0.775486
Target:  5'- gCGugGCGCUGgaccugGCcgccGCCGCGgaggagauauccgcGGUGCGc -3'
miRNA:   3'- gGCugCGCGGCa-----CG----CGGCGC--------------UCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 76154 0.68 0.694489
Target:  5'- -gGGCGUGCCG-GCcCUGCGccAGUACGu -3'
miRNA:   3'- ggCUGCGCGGCaCGcGGCGC--UCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 75724 0.69 0.587492
Target:  5'- gCCGACGUggagGCCGUGCuggaCCGCGuGgaaaGCGg -3'
miRNA:   3'- -GGCUGCG----CGGCACGc---GGCGCuCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 75499 0.67 0.713617
Target:  5'- aCCGGCGCGCgGgaaaGCcUCGCGGGccACGa -3'
miRNA:   3'- -GGCUGCGCGgCa---CGcGGCGCUCa-UGC- -5'
5996 5' -60.1 NC_001806.1 + 75310 0.68 0.655726
Target:  5'- gCGGCcaugGCCGacaGCGCCGCGGGaUACGu -3'
miRNA:   3'- gGCUGcg--CGGCa--CGCGGCGCUC-AUGC- -5'
5996 5' -60.1 NC_001806.1 + 68601 0.67 0.70408
Target:  5'- gCCGGucCGCGUCcgccaGUGCGCCGUgGAGUGg- -3'
miRNA:   3'- -GGCU--GCGCGG-----CACGCGGCG-CUCAUgc -5'
5996 5' -60.1 NC_001806.1 + 65233 0.69 0.587492
Target:  5'- aCCGcagaGCgGCGCCGUGUGUCGCGAc---- -3'
miRNA:   3'- -GGC----UG-CGCGGCACGCGGCGCUcaugc -5'
5996 5' -60.1 NC_001806.1 + 63802 0.66 0.774595
Target:  5'- uCgGACGCGCgcucucuuuguUGUGCGCCgccaccaGCGAGUcaaggaccuugaggGCGg -3'
miRNA:   3'- -GgCUGCGCG-----------GCACGCGG-------CGCUCA--------------UGC- -5'
5996 5' -60.1 NC_001806.1 + 57132 0.68 0.675172
Target:  5'- gCGuauaucCGCGCgGUGgGCCGCGcgaggggagggGGUGCGc -3'
miRNA:   3'- gGCu-----GCGCGgCACgCGGCGC-----------UCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 54928 0.66 0.795638
Target:  5'- gUCGGgGUGCuCGUGCGuCUGCGuGU-CGa -3'
miRNA:   3'- -GGCUgCGCG-GCACGC-GGCGCuCAuGC- -5'
5996 5' -60.1 NC_001806.1 + 54367 0.68 0.665462
Target:  5'- gCCGAUGaCGCUGccGCGaCUGUGAuGUGCGg -3'
miRNA:   3'- -GGCUGC-GCGGCa-CGC-GGCGCU-CAUGC- -5'
5996 5' -60.1 NC_001806.1 + 51025 0.68 0.694489
Target:  5'- gCGGCGgGuCCGUGUuggGcCCGCGGGUccGCGu -3'
miRNA:   3'- gGCUGCgC-GGCACG---C-GGCGCUCA--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.