Results 61 - 80 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 50749 | 0.68 | 0.645974 |
Target: 5'- aCCGugGUGgCGUGCgugacacugGCCGCGuuugACGg -3' miRNA: 3'- -GGCugCGCgGCACG---------CGGCGCuca-UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 50658 | 0.66 | 0.778151 |
Target: 5'- -gGACGCGCaccgGCGCCGgGAcgACGc -3' miRNA: 3'- ggCUGCGCGgca-CGCGGCgCUcaUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 50579 | 0.72 | 0.422551 |
Target: 5'- aCGcCGUGCUGgGCGCUGCGGuGUACGc -3' miRNA: 3'- gGCuGCGCGGCaCGCGGCGCU-CAUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 49519 | 0.67 | 0.723089 |
Target: 5'- -gGugGCGCCGU-CGCCGCuguuccuagagGAGcUGCa -3' miRNA: 3'- ggCugCGCGGCAcGCGGCG-----------CUC-AUGc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 49277 | 0.67 | 0.723089 |
Target: 5'- cCCG-UGCGCCGUcgacgggaagGC-CCGCGAGcccgACGa -3' miRNA: 3'- -GGCuGCGCGGCA----------CGcGGCGCUCa---UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 49203 | 0.69 | 0.597202 |
Target: 5'- aCCuGCGUGCgGUGUuCCGCGGGgaugACGa -3' miRNA: 3'- -GGcUGCGCGgCACGcGGCGCUCa---UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 48788 | 0.69 | 0.636212 |
Target: 5'- gCCGGCGUG-UGUGUuaGCCGCGucUGCGg -3' miRNA: 3'- -GGCUGCGCgGCACG--CGGCGCucAUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 44496 | 0.68 | 0.665462 |
Target: 5'- aCCGugGUGCCGUuuGCCGgGAcgGUGa- -3' miRNA: 3'- -GGCugCGCGGCAcgCGGCgCU--CAUgc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 42612 | 0.73 | 0.387312 |
Target: 5'- -gGACGCGCCcugaucauacUGCGCCGCGgcggcgucgcguccGGUGCGg -3' miRNA: 3'- ggCUGCGCGGc---------ACGCGGCGC--------------UCAUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 42231 | 0.67 | 0.70408 |
Target: 5'- cCCGGC-CGCCGcgGCcCCGCGGgcGUACu -3' miRNA: 3'- -GGCUGcGCGGCa-CGcGGCGCU--CAUGc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 42006 | 0.66 | 0.778151 |
Target: 5'- -gGGCuGCuCCGUGCugGCCGCgGGGUugGg -3' miRNA: 3'- ggCUG-CGcGGCACG--CGGCG-CUCAugC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 41426 | 0.73 | 0.39776 |
Target: 5'- cCCaGCGCGCCGUG-GUCG-GGGUGCGc -3' miRNA: 3'- -GGcUGCGCGGCACgCGGCgCUCAUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 40559 | 0.67 | 0.70408 |
Target: 5'- -gGGCGgGgCGUgaaaauggaaGCGCCGCGGGUcgGCGu -3' miRNA: 3'- ggCUGCgCgGCA----------CGCGGCGCUCA--UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 40042 | 0.67 | 0.741813 |
Target: 5'- aUGGCGUGCCG-GCGUCaaugguaaacaGCGuGUGCa -3' miRNA: 3'- gGCUGCGCGGCaCGCGG-----------CGCuCAUGc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 36189 | 0.69 | 0.597202 |
Target: 5'- uUGACGCGUCGaUGCucuGCCGCGcGgGCGg -3' miRNA: 3'- gGCUGCGCGGC-ACG---CGGCGCuCaUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 35558 | 0.75 | 0.308414 |
Target: 5'- cUCGGCGCGcCCG-GCGCCGCGccgaacgacGUGCGc -3' miRNA: 3'- -GGCUGCGC-GGCaCGCGGCGCu--------CAUGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 34318 | 0.72 | 0.465849 |
Target: 5'- gCGGCGCGCCGgacgggGCGCUG-GAGauaACGg -3' miRNA: 3'- gGCUGCGCGGCa-----CGCGGCgCUCa--UGC- -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 30313 | 0.68 | 0.675172 |
Target: 5'- cCCGcggacGCGCGCCGUGUGCC-CcAGUcGCa -3' miRNA: 3'- -GGC-----UGCGCGGCACGCGGcGcUCA-UGc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 30232 | 0.7 | 0.539498 |
Target: 5'- gCCGugGCcCCGUGCG-UGCGAGcGCc -3' miRNA: 3'- -GGCugCGcGGCACGCgGCGCUCaUGc -5' |
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5996 | 5' | -60.1 | NC_001806.1 | + | 29948 | 0.72 | 0.439584 |
Target: 5'- cCCGccaguCGCgaGCCGcgGCGCCGCGGGggGCGu -3' miRNA: 3'- -GGCu----GCG--CGGCa-CGCGGCGCUCa-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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