Results 81 - 100 of 126 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 27278 | 0.66 | 0.786958 |
Target: 5'- aUCGGCG-GCCGccaGCGCgGCGGGgccCGg -3' miRNA: 3'- -GGCUGCgCGGCa--CGCGgCGCUCau-GC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 26967 | 0.69 | 0.586523 |
Target: 5'- cCUGGCGCGCCGcggcucgUGgGCCcGCGAGcggGCc -3' miRNA: 3'- -GGCUGCGCGGC-------ACgCGG-CGCUCa--UGc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 26803 | 0.76 | 0.275977 |
Target: 5'- cCUGGCGCGCC-UGCGCCuGCGAcGcGCGg -3' miRNA: 3'- -GGCUGCGCGGcACGCGG-CGCU-CaUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 25922 | 0.69 | 0.597202 |
Target: 5'- gCGGCGUGCgCGcGCGCgGCGGGcguggggGCGg -3' miRNA: 3'- gGCUGCGCG-GCaCGCGgCGCUCa------UGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 25823 | 0.72 | 0.465849 |
Target: 5'- gUGACGUGCggaGUGCGCCGUGcucuGUugGu -3' miRNA: 3'- gGCUGCGCGg--CACGCGGCGCu---CAugC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 24640 | 0.72 | 0.448246 |
Target: 5'- -gGGCGCGCCGcUGCgGCC-CGuGUACGu -3' miRNA: 3'- ggCUGCGCGGC-ACG-CGGcGCuCAUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 24575 | 0.68 | 0.655726 |
Target: 5'- cCCGGCGCGCCGgacuuCUGCGAGg--- -3' miRNA: 3'- -GGCUGCGCGGCacgc-GGCGCUCaugc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 24507 | 0.68 | 0.684851 |
Target: 5'- aCCGcCGgGCCGUGCuGCCgGCGcuGG-ACGg -3' miRNA: 3'- -GGCuGCgCGGCACG-CGG-CGC--UCaUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 24404 | 0.82 | 0.119437 |
Target: 5'- cCCGACGCGCCGccgcugcgccUGUGCCGCGGcggcaacGUGCGc -3' miRNA: 3'- -GGCUGCGCGGC----------ACGCGGCGCU-------CAUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 24281 | 0.7 | 0.539498 |
Target: 5'- gCCGugcagUGCGCCGUGCGCuggccggcggCGCGGGaccUGCGc -3' miRNA: 3'- -GGCu----GCGCGGCACGCG----------GCGCUC---AUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 24224 | 0.66 | 0.778151 |
Target: 5'- gCCGACGgGCCcgcgGUGUCGCGGcaGCa -3' miRNA: 3'- -GGCUGCgCGGca--CGCGGCGCUcaUGc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 24071 | 0.67 | 0.741813 |
Target: 5'- cCCGACGUGUCG-GCGCUggGCGcacAGgGCGu -3' miRNA: 3'- -GGCUGCGCGGCaCGCGG--CGC---UCaUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 23712 | 0.66 | 0.804183 |
Target: 5'- aUCGcCGCGCgGUGCGCCGgGcccGCc -3' miRNA: 3'- -GGCuGCGCGgCACGCGGCgCucaUGc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 23241 | 0.72 | 0.443037 |
Target: 5'- gCCGACGCGCUGgcggccgccgccgccUccgccGCGCCGCGGGagggGCGc -3' miRNA: 3'- -GGCUGCGCGGC---------------A-----CGCGGCGCUCa---UGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 23073 | 0.75 | 0.295101 |
Target: 5'- gCCGugGcCGCCGUgcGCGCCGUGAGc--- -3' miRNA: 3'- -GGCugC-GCGGCA--CGCGGCGCUCaugc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 23011 | 0.7 | 0.53855 |
Target: 5'- gCGACGCGCUGgugcucaUGCGCCugcGCGGGgaccUGCGc -3' miRNA: 3'- gGCUGCGCGGC-------ACGCGG---CGCUC----AUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 22962 | 0.77 | 0.246325 |
Target: 5'- gCCGACGCGCCccgccUGCGCgcguggcugCGCGAGcUGCGg -3' miRNA: 3'- -GGCUGCGCGGc----ACGCG---------GCGCUC-AUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 22766 | 0.76 | 0.275977 |
Target: 5'- aCGACGaCGCCGgGCGCCGCGcccAGgcCGg -3' miRNA: 3'- gGCUGC-GCGGCaCGCGGCGC---UCauGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 22640 | 0.76 | 0.269826 |
Target: 5'- gCGAgCGCGCgGUGC-CCGCcGGGUACGg -3' miRNA: 3'- gGCU-GCGCGgCACGcGGCG-CUCAUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 22182 | 0.7 | 0.568166 |
Target: 5'- cCCGGCG-GCCGUguggGCGCC-CGAGcuggGCGa -3' miRNA: 3'- -GGCUGCgCGGCA----CGCGGcGCUCa---UGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home